Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L21
(473 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67949-5|AAB07566.1| 705|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 27 5.2
Z83228-9|CAB05737.2| 539|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z68106-9|CAE17838.1| 551|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z49207-10|CAE17907.1| 551|Caenorhabditis elegans Hypothetical p... 27 5.2
U67079-1|AAB40716.1| 539|Caenorhabditis elegans C2-HC type zinc... 27 5.2
AC006790-5|AAF60733.1| 330|Caenorhabditis elegans Hypothetical ... 27 6.9
U80437-5|AAV58881.1| 527|Caenorhabditis elegans Neurabin protei... 27 9.1
U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protei... 27 9.1
U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protei... 27 9.1
U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protei... 27 9.1
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 27 9.1
>U67949-5|AAB07566.1| 705|Caenorhabditis elegans Hypothetical
protein F55A4.5 protein.
Length = 705
Score = 30.7 bits (66), Expect = 0.56
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 132 RKASAHHHLQNLTQRAPYS-QTTRYPSVKLDSIFASFS 22
+ +SAHHHL+ L+ +S Q T +P V +D F S
Sbjct: 629 QSSSAHHHLEQLSDFFKFSLQYTSFPQVGIDQHFTIVS 666
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 120 PKPFVNRAQSMRAPVAQKPVLQSFGSMRQAPVTP 221
PKP V +A + AP KP Q ++Q P P
Sbjct: 311 PKPAVQQAPTRAAPAPPKPAPQQAPPVQQNPPKP 344
>Z83228-9|CAB05737.2| 539|Caenorhabditis elegans Hypothetical
protein F52F12.6 protein.
Length = 539
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 33 QISNPILQKDI--ELSVNTVPVVSDSEDGDEPKPFVNRAQSMR 155
++ +PI +I ELS++T P V+ + +G P P + S+R
Sbjct: 216 RVMSPITHTNISDELSISTTPTVAFTPNGSIPSPGTGYSWSIR 258
>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
F57C7.1a protein.
Length = 1209
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 96 SDSEDGD-EPKPFVNRAQSMRAPVAQKPVLQ 185
SDS D D EPKP + + + VA+KP Q
Sbjct: 1077 SDSSDSDSEPKPQAKKPEPPQKKVAKKPAPQ 1107
>Z68106-9|CAE17838.1| 551|Caenorhabditis elegans Hypothetical
protein F41E7.9 protein.
Length = 551
Score = 27.5 bits (58), Expect = 5.2
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 15 VPLRNLQISNPILQKDIELSVNTV--PVVSDSEDGDEPKPFVNRAQSMRAPVAQKPVLQS 188
V LR L ++ ++ +E +N + + G P + + Q AP+ + +Q
Sbjct: 157 VGLRLLYMNGQLVYVPVEPHINLMINKQFGNPIQGASPPVILPQIQQ-HAPILAQNAIQP 215
Query: 189 FGSMRQAPVTPRPV 230
F SM Q+P P P+
Sbjct: 216 FQSMPQSPSQPNPL 229
>Z49207-10|CAE17907.1| 551|Caenorhabditis elegans Hypothetical
protein F41E7.9 protein.
Length = 551
Score = 27.5 bits (58), Expect = 5.2
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 15 VPLRNLQISNPILQKDIELSVNTV--PVVSDSEDGDEPKPFVNRAQSMRAPVAQKPVLQS 188
V LR L ++ ++ +E +N + + G P + + Q AP+ + +Q
Sbjct: 157 VGLRLLYMNGQLVYVPVEPHINLMINKQFGNPIQGASPPVILPQIQQ-HAPILAQNAIQP 215
Query: 189 FGSMRQAPVTPRPV 230
F SM Q+P P P+
Sbjct: 216 FQSMPQSPSQPNPL 229
>U67079-1|AAB40716.1| 539|Caenorhabditis elegans C2-HC type zinc
finger proteinC.e-MyT1 protein.
Length = 539
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 33 QISNPILQKDI--ELSVNTVPVVSDSEDGDEPKPFVNRAQSMR 155
++ +PI +I ELS++T P V+ + +G P P + S+R
Sbjct: 216 RVMSPITHTNISDELSISTTPTVAFTPNGSIPSPGTGYSWSIR 258
>AC006790-5|AAF60733.1| 330|Caenorhabditis elegans Hypothetical
protein Y49F6B.7 protein.
Length = 330
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 321 IKSTDYVDCIEEKQAPLADINEESSDNIYAIIEE 422
+K +YV+C ++ + + D N+Y I++E
Sbjct: 277 MKGVNYVECYDKSEEVIVDSEAVRVKNLYQIVDE 310
>U80437-5|AAV58881.1| 527|Caenorhabditis elegans Neurabin protein
1, isoform e protein.
Length = 527
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 9 DKVPLRNLQISNPILQKDIELSVNTVPVVSDSEDGDEPKPFVNRAQSMRAP 161
DK + NL+ P +KD E+SV + S + P P ++ S P
Sbjct: 355 DKAVMVNLETITPSTKKDAEVSVGSSWTEEYSSPCESPVPRISEPASPALP 405
>U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protein
1, isoform b protein.
Length = 561
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 9 DKVPLRNLQISNPILQKDIELSVNTVPVVSDSEDGDEPKPFVNRAQSMRAP 161
DK + NL+ P +KD E+SV + S + P P ++ S P
Sbjct: 389 DKAVMVNLETITPSTKKDAEVSVGSSWTEEYSSPCESPVPRISEPASPALP 439
>U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protein
1, isoform d protein.
Length = 658
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 9 DKVPLRNLQISNPILQKDIELSVNTVPVVSDSEDGDEPKPFVNRAQSMRAP 161
DK + NL+ P +KD E+SV + S + P P ++ S P
Sbjct: 486 DKAVMVNLETITPSTKKDAEVSVGSSWTEEYSSPCESPVPRISEPASPALP 536
>U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protein
1, isoform a protein.
Length = 721
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 9 DKVPLRNLQISNPILQKDIELSVNTVPVVSDSEDGDEPKPFVNRAQSMRAP 161
DK + NL+ P +KD E+SV + S + P P ++ S P
Sbjct: 549 DKAVMVNLETITPSTKKDAEVSVGSSWTEEYSSPCESPVPRISEPASPALP 599
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 96 SDSEDGDEPKPFVNRAQSMR--APVAQKPVLQSFGSMRQAPVTPRP 227
SD ED ++ R +S + A A + VL+ G +RQ P P P
Sbjct: 1204 SDDEDEEDIVEEETRGRSAKRKANAAMRDVLEFEGVLRQTPAPPPP 1249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,077,905
Number of Sequences: 27780
Number of extensions: 225871
Number of successful extensions: 701
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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