Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L20
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    29   0.38 
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   0.89 
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   6.3  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +2

Query: 2   HEAISSVSYATRNLKEFVNVWKVRSCSTHYIMFVLLTSHAYNRLFAIYINNFELILLTLV 181
           + A  SV YAT    E  +V  V+    HY +  ++   +   +F  ++ ++  ++LT +
Sbjct: 81  YSAAVSVFYATYITAETPSVLLVKKFGPHYYLSAMIIGWSLVTIFTCFVRHYWSLVLTRL 140

Query: 182 KLDI 193
            L I
Sbjct: 141 LLGI 144


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 12/59 (20%), Positives = 32/59 (54%)
 Frame = -3

Query: 454 HHFTLYIHTHNLITI*LLQFIFSVIEPIKRMSLF*MHSQSQSRXTLINLTYLSEPCTIL 278
           HHFT+  + ++L    +   +F  + P + ++L  M    ++  +++ ++++  P TI+
Sbjct: 64  HHFTIACYHYSLCLSLVALLLFYTLYPFQSITLPLMPFLEKTESSILTISHVYSPPTII 122


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 20  VSYATRNLKEFVNVWKVRSCSTH-YIMFVL 106
           +S+   NLKE ++VWK      H YI+  L
Sbjct: 426 ISFLLLNLKESIHVWKELYFIVHIYILIAL 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,890
Number of Sequences: 5004
Number of extensions: 30745
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)