Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L20
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053           28   3.6  
04_04_1084 + 30716247-30716345,30716762-30716937,30717755-307179...    27   6.3  

>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
          Length = 1613

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +2

Query: 26   YATRNLKEFVNV-W--KVRSCSTHYIMFVLLTSHAYNRLFAIYI--NNFELI 166
            + +R++   V + W  KVRSC  H IM  ++ S +    FA +   N  EL+
Sbjct: 1157 FVSRSMVHLVRIDWSGKVRSCKVHDIMLEVIVSKSLEENFASFFCDNGTELV 1208


>04_04_1084 +
           30716247-30716345,30716762-30716937,30717755-30717970,
           30718070-30718212,30718682-30718884
          Length = 278

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 155 FELILLTLVKLDIVLSLISRCNHKRNLFLYYILKITIYRWK 277
           F+L L  ++KL  V+ L S+   K+ LFL  +    IY ++
Sbjct: 126 FQLDLALIIKLAAVVFLFSQEGSKQRLFLLILFASVIYLYQ 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,806,569
Number of Sequences: 37544
Number of extensions: 150572
Number of successful extensions: 269
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)