Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L19
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 29 0.46
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 28 1.1
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 1.8
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 5.6
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T... 25 7.4
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.8
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 9.8
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 9.8
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 25 9.8
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 29.1 bits (62), Expect = 0.46
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -3
Query: 363 SARNKKKCVQFTRDRSEILNVFPSLFFLS 277
SAR +++ +F+ + E+L+V PSL ++S
Sbjct: 843 SARLRRRAFEFSTFQDEVLSVIPSLMYIS 871
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 339 VQFTRDRSEILNVFP-SLFFLSGGNAFKTPRGRPPH-LGW 226
+ FTRD +E LN+F S+ F G N P H GW
Sbjct: 85 IAFTRDTTEGLNLFQRSMHFQPGDNVVLLDGEHPNHGFGW 124
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 211 NPVSPPSQMRRTAPGGFKCISPRQKKKAGK 300
NPVS P+Q + P SPRQ +K K
Sbjct: 575 NPVSLPNQQKSVNPSLMTVSSPRQVRKKRK 604
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 510 TSFDIYSYKI*NKLIHR*HYFKYESLGQID 421
+S ++Y Y +L+ + Y+KY+SL ID
Sbjct: 876 SSSNVYDYLPAFRLLTKIEYYKYQSLRSID 905
>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 256 GFKCISPRQKKKAG 297
GFKC+ PR KK G
Sbjct: 120 GFKCVDPRLKKLLG 133
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 24.6 bits (51), Expect = 9.8
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 140 SVYLIDGTTERSTTQAGKDIACLAIPYRPHPKCGGRPRG-VLNAFPPDKKKRLGKTFKIS 316
+VY++D TT RS +GK + + + P +L + + + K+ ++
Sbjct: 61 TVYVLDATTRRSALLSGKHDTMIFTLFVKYITSLNHPEYLLLGGYSYGARISMHKSITLA 120
Query: 317 LLSRVNCTHFFLFLALPYI 373
+ R++ +LFLA PY+
Sbjct: 121 IDKRISHVS-YLFLA-PYL 137
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 130 DGLIRVSHRRYNG-KVYNPGWERHSMPCNPVSPPSQMRRTAPGG 258
DG++ V ++ K+YNP S+ +P+S S +R G
Sbjct: 368 DGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAG 411
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 264 MHFPPTKKKGWERHLR 311
+HFP K+ W+R LR
Sbjct: 177 LHFPRRKENSWKRSLR 192
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 247 PSAAFGMGAIRDCKACYVFPSLGC 176
PS A + I+ C ++PSL C
Sbjct: 318 PSVAISLQRIKVSSLCILYPSLAC 341
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.6 bits (51), Expect = 9.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 152 IDGTTERSTTQAGKDIACLAIPYRPHPKCGGRPRGVLNAFPPDKKKR 292
ID +++ Q+G + L +P P G RGV F PD KR
Sbjct: 344 IDRFSKKQPGQSGLMMEMLWTDPQPAPGRGPSKRGVGLQFGPDVSKR 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,620
Number of Sequences: 5004
Number of extensions: 56717
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -