Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L19
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628... 29 1.9
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 29 1.9
10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197 29 2.5
08_02_1406 - 26854845-26855606 28 4.3
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 28 4.3
06_01_0137 - 1045301-1047601 28 5.7
06_01_0124 - 958935-959967,959985-961222 27 7.5
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 27 10.0
06_03_1150 + 28022633-28023374,28023501-28023565 27 10.0
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966 27 10.0
>02_04_0211 +
20957553-20957828,20957944-20958258,20962094-20962801,
20963362-20963609,20963758-20964101,20964200-20964236,
20964270-20964575,20965281-20965347,20965498-20965626
Length = 809
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 257 PPGAVRRIWDGGDTGLQGMLCLSQP 183
PPG R +DGGD G GM+ L +P
Sbjct: 403 PPGGTR--FDGGDGGTLGMMVLGEP 425
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 504 FDIYSYKI*NKLIHR*HYFKYESLGQIDDEWNYRNFILIFLF 379
F + SY I + + H F YE + +WN+R L+F F
Sbjct: 192 FKVLSYNILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEF 233
>10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197
Length = 490
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 284 FCRGEMHLKPPGAVRRIWDGGDTGL 210
FC GE + AVRR+W GG G+
Sbjct: 120 FCAGETAEEAAAAVRRLWRGGMGGI 144
>08_02_1406 - 26854845-26855606
Length = 253
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 152 IDGTTERSTTQAGKDIACLAIPYRPHPKCGGRP 250
+DG + T + +AC +R HP+CG P
Sbjct: 97 LDGFSHVYTCSKSRHLACGRGGFRAHPRCGNLP 129
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 166 GKVYNPGWERHSMPCNPVSPPSQMRRTAPGGFKCISPRQ 282
G Y P + H P P+ PS++ +PGG SP Q
Sbjct: 146 GSGYPPPHQHHMAP-PPIHTPSRLSHDSPGGSPWRSPMQ 183
>06_01_0137 - 1045301-1047601
Length = 766
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 187 WERHSMPCN-PVSPPSQMRRTAPGGFKCISPRQKKK 291
W SM C+ V PPS++RR+A G + ++ R ++
Sbjct: 462 WLTVSMVCDYAVKPPSRLRRSAIRGVQWVTNRMSRR 497
>06_01_0124 - 958935-959967,959985-961222
Length = 756
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 187 WERHSMPCN-PVSPPSQMRRTAPGGFKCISPRQKKK 291
W SM C+ V PPS++RR A G + ++ R ++
Sbjct: 452 WLTVSMVCDYAVKPPSRLRRAAIRGVQWVTNRMSRR 487
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 205 PCNPVSPPSQMRRTAPGGFKCISPRQKKK 291
P +PVSPPSQ +P SP Q K+
Sbjct: 136 PSSPVSPPSQASPASPAAPAPPSPPQPKE 164
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 205 PCNPVSPPSQMRRTAPGGFKCISPRQKKK 291
P +PVSPPSQ +P SP Q K+
Sbjct: 136 PSSPVSPPSQASPASPAAPAPPSPPQPKE 164
>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
Length = 766
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 205 PCNPVSPPSQMRRTAPGGFKCISPRQKKK 291
P P S P PGGF+C+ PR + K
Sbjct: 325 PKYPCSVPGTCHNL-PGGFECLCPRSRPK 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,782,453
Number of Sequences: 37544
Number of extensions: 385163
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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