Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L19
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z78411-2|CAB01646.1|  285|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    28   5.1  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    27   9.0  
AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine re...    27   9.0  

>Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical
           protein F26H11.4 protein.
          Length = 739

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 199 SMPCNPVSPPSQMRRTAPGGFKCISPRQK 285
           S+PC P  PP   R+   G   C+ P QK
Sbjct: 183 SLPCPPPPPPLSERKKNVGPKPCVGPAQK 211


>Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical
           protein F53F1.7 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 238 RRTAPGGFKCISPRQKKKAGKDI*DFASITCELHTFFFISSATVHSLK-KKNQNK 399
           RRT+  G K +  R+K+K    +    +I C L   +F  +  V+SL+  +  NK
Sbjct: 222 RRTSVAGSKYLDSREKQKKESSLDKMTAIVCSLELIYF--AFVVYSLQINQTMNK 274


>Z78411-2|CAB01646.1|  285|Caenorhabditis elegans Hypothetical
           protein F02D8.2 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 160 YNGKVYNPGWERHSMPCNPVSPPSQMRRTAPGGF 261
           Y  + YNP  +R +    P +PP+    TAP  +
Sbjct: 47  YQSRNYNPPQQRFNYGLPPPTPPANSYATAPANY 80


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 197 IACLAIPYRPHPKCGGRPRGVLNAF 271
           I+ L IPY  +P   G P GVLN F
Sbjct: 64  ISLLTIPYFLYPALAGFPLGVLNFF 88


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
           protein 1 protein.
          Length = 1963

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 235 MRRTAPGGFKCISPRQKKKAGK 300
           +R T+P   +CI P  +KK+GK
Sbjct: 667 LRNTSPHFVRCIIPNHEKKSGK 688


>AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 59 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 313 FASITCELHTFFFISSATVHSLKKKNQNKVPIIPFVIDLPQ*LVLKIMLSVY 468
           F+  TC L+T+F +    +  LK K++  +    FV+D    L     LS Y
Sbjct: 15  FSVTTCSLNTYFVLFIFFIKKLKNKSEFSLIYGRFVLDSLYSLSTSAHLSYY 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,225
Number of Sequences: 27780
Number of extensions: 334560
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)