Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L19
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.6  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 485 KFRTN*YTDNIILSTSHWGKSMTNGII 405
           KF  N Y D +I+ T +   SM +GI+
Sbjct: 306 KFNNNVYKDALIVCTVNSCTSMLSGIV 332


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 485 KFRTN*YTDNIILSTSHWGKSMTNGII 405
           KF  N Y D +I+ T +   SM +GI+
Sbjct: 359 KFNNNVYKDALIVCTVNSCTSMLSGIV 385


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 243 PPHLGWGRYG 214
           PP  GWG YG
Sbjct: 32  PPLFGWGSYG 41


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 471 ICSKFYRNKYRKKSIHPIR 527
           +C KF   K RKKS+  ++
Sbjct: 116 VCLKFEEQKRRKKSLDDVK 134


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 55 FNLFWHVLRFIC 20
          FN++W+V  F+C
Sbjct: 43 FNVYWNVPTFMC 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,811
Number of Sequences: 438
Number of extensions: 4359
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)