Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L18
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 271 7e-74
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 270 2e-73
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 269 2e-73
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 29 0.78
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 27 2.4
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 3.2
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 3.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 4.2
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 26 5.5
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 7.3
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 7.3
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 9.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 271 bits (664), Expect = 7e-74
Identities = 121/168 (72%), Positives = 142/168 (84%)
Frame = +3
Query: 156 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAG 335
YAP+PS GPHK RECLPL++FLRNRLKYAL G EV + QRLIKVDGKVRTD T+P G
Sbjct: 27 YAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK-AILMQRLIKVDGKVRTDSTFPTG 85
Query: 336 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGR 515
FMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLC V+RV G K VP+LVTHDGR
Sbjct: 86 FMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGR 145
Query: 516 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGDLCMITGGRNLGRVG 659
T+RYPDPLIKVND+++L++ TNKI FIKFD+ M+TGGRN+GRVG
Sbjct: 146 TIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 70 MARGPKKHLKRLNAPKAWM 126
M RGPKKHLKR+ AP W+
Sbjct: 1 MVRGPKKHLKRVAAPHHWL 19
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 270 bits (661), Expect = 2e-73
Identities = 120/168 (71%), Positives = 142/168 (84%)
Frame = +3
Query: 156 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAG 335
YAP+PS GPHK RECLPL++FLRNRLKYAL G EV + QRLIKVDGKVRTD T+P G
Sbjct: 27 YAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK-AILMQRLIKVDGKVRTDSTFPTG 85
Query: 336 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGR 515
FMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLC V+RV G K VP+LVTHDGR
Sbjct: 86 FMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGR 145
Query: 516 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGDLCMITGGRNLGRVG 659
T+RYPDPLIKVND+++L++ TNKI FIKFD+ M+TGGRN+GRVG
Sbjct: 146 TIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 70 MARGPKKHLKRLNAPKAWM 126
M RGPKKHLKR+ AP W+
Sbjct: 1 MVRGPKKHLKRVAAPHHWL 19
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 269 bits (660), Expect = 2e-73
Identities = 120/168 (71%), Positives = 142/168 (84%)
Frame = +3
Query: 156 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAG 335
YAP+PS GPHK RECLPL++FLRNRLKYAL G EV + QRLI+VDGKVRTD T+P G
Sbjct: 27 YAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK-AILMQRLIQVDGKVRTDSTFPTG 85
Query: 336 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGR 515
FMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLC V+RV G K VP+LVTHDGR
Sbjct: 86 FMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGR 145
Query: 516 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGDLCMITGGRNLGRVG 659
T+RYPDPLIKVND+++L++ TNKI FIKFD+ M+TGGRN+GRVG
Sbjct: 146 TIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 70 MARGPKKHLKRLNAPKAWM 126
M RGPKKHLKR+ AP W+
Sbjct: 1 MVRGPKKHLKRVAAPHHWL 19
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 0.78
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 539 HQGERLGAARHLHQQDHGLHQVRLRRPLHD 628
H G LGA +H H + G H V P++D
Sbjct: 175 HHGPTLGAKQHSHSHEDGAHGVH-EHPVYD 203
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 117 SMDVWTKRWGWRCYAPRPSTGPHKL 191
S + +RWG R YAP + PHK+
Sbjct: 30 SSNAVAQRWGKRFYAPIETETPHKV 54
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 336 IPPGT-WGQSALSRPL**DVASQILKPPHCR 247
IPP T WG + ++R L +V ++ P H R
Sbjct: 465 IPPKTPWGTTLINRKLREEVLREVFAPKHAR 495
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 397 FTSYIKRNNSFVFSMDTT-SINPAGYVGSVRTFPSTLMRRCFTNP 266
F +Y+++ +F T SI Y+G+ + FP + CF P
Sbjct: 226 FRTYLRQKPEELFIFTTKFSIVLCAYMGNSQIFPLVSSKNCFEEP 270
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.2
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -2
Query: 475 PVATRRTLHSLYL-ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFP 299
P+AT T SL ASS + L F NN FS T +N G S
Sbjct: 222 PLATSPTSFSLASSASSTNLGGSKGLLFQQMTSENNRDYFSRRPTLLNTYGNRCSSTDTL 281
Query: 298 STLMRRCFTNP*ATSLPVSA 239
S+L R +P SLP+ +
Sbjct: 282 SSLSRLTSQDPLKASLPLQS 301
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 308 HFPVHFDETLLHKSLSHLIAGERVLEPIS 222
H + FD+ LLH +S +I RV + +S
Sbjct: 24 HARIDFDQELLHGKVSFVIQSARVSQALS 52
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 475 PVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFS 356
P+ RRT L L+ + W F S + RN +FS
Sbjct: 423 PILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFS 462
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -2
Query: 595 KSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSL 443
K LL+E+SS E+ T+ S YRS Y L TL L
Sbjct: 661 KIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVLGTLDCL 711
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 385 IKRNNSFVFSMDTTSINPAGYVGSV 311
+K+ ++ VF +INPA Y G+V
Sbjct: 40 LKKRDTNVFDSVVDTINPASYFGTV 64
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 342 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYL-VTHDGRT 518
+V S+EK N++F + Y+V + + + K+ ++ ++ K+VP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 519 LR 524
L+
Sbjct: 1778 LK 1779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,503
Number of Sequences: 5004
Number of extensions: 50312
Number of successful extensions: 159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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