Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L18
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 249 2e-66
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 243 1e-64
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 242 2e-64
12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233... 29 2.5
01_05_0674 - 24187820-24188713,24188809-24189204 29 3.3
10_08_0510 + 18430580-18431781,18433176-18433554 29 4.3
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 29 4.3
01_05_0710 + 24492337-24493053 29 4.3
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 5.7
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 28 5.7
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084... 28 5.7
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 249 bits (609), Expect = 2e-66
Identities = 119/207 (57%), Positives = 149/207 (71%)
Frame = +3
Query: 39 FFLVQKVLFKHGARAKEALEAFKRP*SMDVWTKRWGWRCYAPRPSTGPHKLRECLPLVIF 218
FF+ +L + A+ + KR + W +AP+PS+GPHK RECLPL++
Sbjct: 4 FFVKYVILDQRSFWARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILI 63
Query: 219 LRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVK 398
LRNRLKYALT EV + QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD K
Sbjct: 64 LRNRLKYALTYREVI-SILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTK 122
Query: 399 GRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIST 578
GRF +H I E+AK+KLC VR V G K +P+L T+DGRT+RYPDPLIK ND++++D+ T
Sbjct: 123 GRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLET 182
Query: 579 NKIMDFIKFDSGDLCMITGGRNLGRVG 659
NKI+DFIKFD G++ M+TGGRN GRVG
Sbjct: 183 NKIVDFIKFDVGNIVMVTGGRNTGRVG 209
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 243 bits (594), Expect = 1e-64
Identities = 108/168 (64%), Positives = 135/168 (80%)
Frame = +3
Query: 156 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAG 335
+AP+PS+GPHK RECLPL++ +RNRLKYALT EV + QR + VDGKVRTD TYPAG
Sbjct: 27 FAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVI-SILMQRHVLVDGKVRTDKTYPAG 85
Query: 336 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGR 515
FMDV+SI KT E +RL+YD KGRF + + E+AK+KLC VR V G K +PYL T+DGR
Sbjct: 86 FMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGR 145
Query: 516 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGDLCMITGGRNLGRVG 659
T+RYPDPLIK ND++++D+ TNKI+DFIKFD G++ M+TGGRN GRVG
Sbjct: 146 TIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +1
Query: 70 MARGPKKHLKRLNAPKAWM 126
MARG KKHLKRLNAPK WM
Sbjct: 1 MARGLKKHLKRLNAPKHWM 19
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 242 bits (592), Expect = 2e-64
Identities = 107/168 (63%), Positives = 135/168 (80%)
Frame = +3
Query: 156 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAG 335
+AP+PS+GPHK RECLPL++ +RNRLKYALT EV + QR + VDGKVRTD TYPAG
Sbjct: 27 FAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVI-SILMQRHVLVDGKVRTDKTYPAG 85
Query: 336 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGR 515
FMDV+SI KT E +RL+YD KGRF + + E+AK+KLC VR V G K +PYL T+DGR
Sbjct: 86 FMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGR 145
Query: 516 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGDLCMITGGRNLGRVG 659
T+RYPDP+IK ND++++D+ TNKI+DFIKFD G++ M+TGGRN GRVG
Sbjct: 146 TIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +1
Query: 70 MARGPKKHLKRLNAPKAWM 126
MARG KKHLKRLNAPK WM
Sbjct: 1 MARGLKKHLKRLNAPKHWM 19
>12_01_1052 +
10821964-10822064,10822434-10822607,10823086-10823346,
10829833-10831798,10832114-10832515
Length = 967
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 176 GSPQAARMLAAS--DLPAKSAQVRAHRQ*GGLRICEATSHQSGRESAD*PHVPGGIYGRC 349
G PQ + L AS +LP S + G R C A +Q G+ +A P G RC
Sbjct: 34 GRPQLSAPLLASVDELPTSSTPASSGSAESGGRTCAAARYQHGQAAAGWPAGFGKRLSRC 93
Query: 350 I 352
+
Sbjct: 94 L 94
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 458 AARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQD 586
AA R P A A AP P P+HQ ++ +RH D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 589 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 440
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 193 MDYLCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 589 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 440
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>01_05_0710 + 24492337-24493053
Length = 238
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -2
Query: 580 LVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWI 410
L M + T +F L++ + +RPS + LLG + +RR ++ V+RW+
Sbjct: 93 LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRARE----AASVVRWL 145
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +2
Query: 467 RDRPQERAVPGDARRAHAP--VPGPAHQGERLGAARHLHQQDHGLHQV-RLRRPLHDHRR 637
++R ++R P D+RR H P PG + + A + L + V R R P+ + +R
Sbjct: 375 KERERDRKHPADSRREHTPPRTPGDRRRSSSVRAEKPLRRPSPRRDAVHRHRSPVKEIKR 434
Query: 638 Q 640
+
Sbjct: 435 E 435
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/38 (31%), Positives = 27/38 (71%)
Frame = -2
Query: 655 TRPRFLPPVIMQRSPESNLMKSMILLVEMSSCTESFTL 542
++PR PP++ +R P+++L + ++ L + SS + SF++
Sbjct: 22 SQPRSPPPLLARRPPKTSLSQQLLRL-DASSSSSSFSV 58
>02_04_0415 +
22706964-22707072,22707784-22708077,22708304-22708416,
22708504-22709002,22709106-22709144,22709228-22709515,
22709766-22709905,22710468-22710960,22711082-22711356
Length = 749
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 387 YDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPD 533
+ V G T ITP EA N+ T + P +++H+G + YPD
Sbjct: 321 FSVDGVLTDFPITPSEAIGCFSNLNNSKTD-NAKPLIISHNGASGDYPD 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,967,416
Number of Sequences: 37544
Number of extensions: 382796
Number of successful extensions: 1234
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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