Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L18
         (659 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   281   8e-76
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   281   8e-76
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   281   8e-76
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   275   4e-74
AE014297-4823|AAF57207.1| 1844|Drosophila melanogaster CG1976-PA...    30   2.4  
AE014296-1894|AAF50104.2|  757|Drosophila melanogaster CG6279-PA...    28   9.8  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  281 bits (688), Expect = 8e-76
 Identities = 128/168 (76%), Positives = 146/168 (86%)
 Frame = +3

Query: 156 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAG 335
           +APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV    V QRL+KVDGKVRTDPTYPAG
Sbjct: 27  FAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVT-KIVMQRLVKVDGKVRTDPTYPAG 85

Query: 336 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGR 515
           +MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLC V++   G K VP+LVTHDGR
Sbjct: 86  YMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGR 145

Query: 516 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGDLCMITGGRNLGRVG 659
           T+RYPDPLI  NDSVQ+DI++ KI D+IKFDSG+LCMITGGRNLGRVG
Sbjct: 146 TIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVG 193



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 70  MARGPKKHLKRLNAPKAWM 126
           MARGPKKHLKRL APKAWM
Sbjct: 1   MARGPKKHLKRLAAPKAWM 19


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  281 bits (688), Expect = 8e-76
 Identities = 128/168 (76%), Positives = 146/168 (86%)
 Frame = +3

Query: 156 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAG 335
           +APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV    V QRL+KVDGKVRTDPTYPAG
Sbjct: 27  FAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVT-KIVMQRLVKVDGKVRTDPTYPAG 85

Query: 336 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGR 515
           +MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLC V++   G K VP+LVTHDGR
Sbjct: 86  YMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGR 145

Query: 516 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGDLCMITGGRNLGRVG 659
           T+RYPDPLI  NDSVQ+DI++ KI D+IKFDSG+LCMITGGRNLGRVG
Sbjct: 146 TIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVG 193



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 70  MARGPKKHLKRLNAPKAWM 126
           MARGPKKHLKRL APKAWM
Sbjct: 1   MARGPKKHLKRLAAPKAWM 19


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  281 bits (688), Expect = 8e-76
 Identities = 128/168 (76%), Positives = 146/168 (86%)
 Frame = +3

Query: 156 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAG 335
           +APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV    V QRL+KVDGKVRTDPTYPAG
Sbjct: 27  FAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVT-KIVMQRLVKVDGKVRTDPTYPAG 85

Query: 336 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGR 515
           +MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLC V++   G K VP+LVTHDGR
Sbjct: 86  YMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGR 145

Query: 516 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGDLCMITGGRNLGRVG 659
           T+RYPDPLI  NDSVQ+DI++ KI D+IKFDSG+LCMITGGRNLGRVG
Sbjct: 146 TIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVG 193



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 70  MARGPKKHLKRLNAPKAWM 126
           MARGPKKHLKRL APKAWM
Sbjct: 1   MARGPKKHLKRLAAPKAWM 19


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  275 bits (674), Expect = 4e-74
 Identities = 126/168 (75%), Positives = 144/168 (85%)
 Frame = +3

Query: 156 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAG 335
           +APRPSTGPHKLRE LPL+ FLRNRLKYAL G EV    V QRL+KV GKVRTDPTYPAG
Sbjct: 27  FAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAEVT-KIVMQRLVKVYGKVRTDPTYPAG 85

Query: 336 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGR 515
           +MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLC V++   G K VP+LVTHDGR
Sbjct: 86  YMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGR 145

Query: 516 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGDLCMITGGRNLGRVG 659
           T+RYPDPLI  NDSVQ+DI++ KI D+IKFDSG+LCMITGGRNLGRVG
Sbjct: 146 TIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVG 193



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 70  MARGPKKHLKRLNAPKAWM 126
           MARGPKKHLKRL APKAWM
Sbjct: 1   MARGPKKHLKRLAAPKAWM 19


>AE014297-4823|AAF57207.1| 1844|Drosophila melanogaster CG1976-PA
           protein.
          Length = 1844

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 440 VQAVQCAAR-RDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQVRLRR 616
           VQ  + A   R  P   A PG A     P P PA+Q   +G  +H   Q H  +Q +   
Sbjct: 3   VQPAEMAENGRSVPDVTASPGRA----PPGPLPANQMPAMGNQQHHGNQQHHGNQQQHHG 58

Query: 617 PLHDHRRQESGS 652
             H + R +SGS
Sbjct: 59  NQHSNHRGQSGS 70


>AE014296-1894|AAF50104.2|  757|Drosophila melanogaster CG6279-PA
           protein.
          Length = 757

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 311 PHFPVHFDETLLHKSLSHLIAGERVLEPISQED 213
           PH  +HFD+ L     S L AG+ +  PI+  +
Sbjct: 153 PHLNIHFDKDLPASGTSPLAAGKLLQNPIANPE 185


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,064,240
Number of Sequences: 53049
Number of extensions: 623961
Number of successful extensions: 2170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2160
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)