Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L18
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   217   8e-57
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.72 
AF164625-1|AAD47816.1|  944|Caenorhabditis elegans tandem-array-...    31   0.72 
AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array ...    31   0.72 
Z75542-1|CAA99859.1|  141|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden...    28   6.8  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   8.9  
AL132948-6|CAC51070.1|  395|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid deplete...    27   8.9  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  217 bits (529), Expect = 8e-57
 Identities = 101/168 (60%), Positives = 127/168 (75%)
 Frame = +3

Query: 156 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVA*GFVKQRLIKVDGKVRTDPTYPAG 335
           +A RP+ GPHKLRE LPL +FLRNRLKYAL   E A   + QR+++VDGKVRT   +P G
Sbjct: 26  FAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTE-AKKILTQRVVRVDGKVRTCHKFPTG 84

Query: 336 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGR 515
           FMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLC V+ V T  K VP L T DGR
Sbjct: 85  FMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGR 144

Query: 516 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGDLCMITGGRNLGRVG 659
           T+RYPDP +KVND++  +IST KI D +KF+ G+L  +TGGRN+GRVG
Sbjct: 145 TIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVG 192



 Score = 35.1 bits (77), Expect = 0.045
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 76  RGPKKHLKRLNAPKAWM 126
           RGPKKHLKRL AP  WM
Sbjct: 2   RGPKKHLKRLAAPSHWM 18


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 436 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 278
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 436 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 278
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>AF164625-1|AAD47816.1|  944|Caenorhabditis elegans
           tandem-array-modifier protein protein.
          Length = 944

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +2

Query: 413 PPYHT*RSQVQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 586
           PP H    ++       R ++P    V G   +     P P H   + G  R  ++HQQ 
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482

Query: 587 HGLHQVRLRRPLHDHRRQE 643
           H +HQV  +      R Q+
Sbjct: 483 HPMHQVEDQMQRQHQRMQQ 501


>AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array
           expression modifierprotein 1 protein.
          Length = 944

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +2

Query: 413 PPYHT*RSQVQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 586
           PP H    ++       R ++P    V G   +     P P H   + G  R  ++HQQ 
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482

Query: 587 HGLHQVRLRRPLHDHRRQE 643
           H +HQV  +      R Q+
Sbjct: 483 HPMHQVEDQMQRQHQRMQQ 501


>Z75542-1|CAA99859.1|  141|Caenorhabditis elegans Hypothetical
           protein F55D12.1 protein.
          Length = 141

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
 Frame = +2

Query: 395 ERKVHYPPYHT*RSQVQAVQCAARRD-RPQERAVPGDARRAHAPVPGPAHQGERLGAA-- 565
           ERK  +PP +    + + V C  RR+   QE++ P    R   P   P  + E    A  
Sbjct: 12  ERKSPHPPQNVISERREFVSCEYRREPLHQEQSRPSSILRNPLPQSHPYEERENARLACE 71

Query: 566 -RHLHQQDHGLHQVRLR-RP 619
            R   Q +HG     LR RP
Sbjct: 72  YRRDQQSEHGQLACELRARP 91


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 394 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 284
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
           of males (increasedx chromosome loss) protein 1, isoform
           a protein.
          Length = 1281

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 122 HALGAFKRFKCFFGPRAMFEQNLLNKKERQLRRQPSA 12
           H +G F RF    GP    + NL++     L  +PS+
Sbjct: 31  HTIGPFTRFTAIIGPNGSGKSNLMDAISFVLGEKPSS 67


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 412 STVSHLK-KPSTSCAMCGASRP 474
           +TV HL  +P TSCA C ++RP
Sbjct: 19  TTVLHLHIRPPTSCATCTSNRP 40


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +3

Query: 399 GRFTIHRITPEEAKYKLCNVRRVATGPKSVP-----YLVTHDGRTLR-YP 530
           G+  + R+T  E  Y+ C +++ A   K VP     Y+V H  R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 466 TRRTLHSLYL--ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGY 323
           T R    LYL       I +I+ L   S++K NNSF+F      I+   Y
Sbjct: 15  TWRLYDPLYLIFCIPATIHYIIVLKVVSHLKENNSFLFIFTILGISDIFY 64


>AL132948-6|CAC51070.1|  395|Caenorhabditis elegans Hypothetical
           protein Y39B6A.7 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 333 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRV 467
           GF DV+S+ + ++L    +D++  F  H+I     + +  N+ RV
Sbjct: 235 GFTDVISMIQRDKLNEKFFDMRFFFVSHQIDRVARRLEELNITRV 279


>AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid depleted
           protein 5 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 459 RRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMD 593
           R ++TG  ++P   +HD + +   D L K +    + +S+++ MD
Sbjct: 18  RCLSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,326,841
Number of Sequences: 27780
Number of extensions: 292467
Number of successful extensions: 869
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)