Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L17
         (165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    27   0.44 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    24   2.3  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    23   7.1  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    22   9.4  

>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 45  LAVRTR*VDALYKQVYACVTRVSTRLEELECGRWSTW 155
           L V+T   +   K    C+  +   ++++ CG+W  W
Sbjct: 419 LVVQTIFENCKEKDKRTCLDEIINNMDQIICGQWGNW 455


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 92  RLCNESQYQAGGARVRALEYLV 157
           R+CNES+Y  G +  + + + V
Sbjct: 872 RMCNESEYTIGTSNAKDVSHFV 893


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 165 HTRTKYSSARTLAPPAW 115
           + +TKY++++ + PP W
Sbjct: 227 YKKTKYNASQIVPPPNW 243


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 89  HLFVECVDLARAHCKHVLGI 30
           H+F +CV     +  HV GI
Sbjct: 333 HIFAQCVHFLSLNALHVPGI 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,670
Number of Sequences: 5004
Number of extensions: 6761
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)