Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L17
         (165 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875...    31   0.095
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    31   0.095
01_01_1015 + 8029884-8030676,8030755-8030771                           27   2.0  
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584...    25   8.3  
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546...    25   8.3  

>03_06_0581 +
           34886728-34886817,34886990-34887175,34887332-34887543,
           34888161-34888318,34888615-34888773,34888921-34888973,
           34889265-34889405,34889788-34889823,34890542-34890776,
           34891017-34891144
          Length = 465

 Score = 31.5 bits (68), Expect = 0.095
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 162 TRTKYSSARTLAPPAWY*LSLHKRTPVCRVRRLSACALQA 43
           +R  +  + +  PPA   L   +RTP CR++  SAC+  A
Sbjct: 352 SRMPHGRSGSAQPPAASGLGAERRTPTCRLQLCSACSCSA 391


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 31.5 bits (68), Expect = 0.095
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 162 TRTKYSSARTLAPPAWY*LSLHKRTPVCRVRRLSACALQA 43
           +R  +  + +  PPA   L   +RTP CR++  SAC+  A
Sbjct: 404 SRMPHGRSGSAQPPAASGLGAERRTPTCRLQLCSACSCSA 443


>01_01_1015 + 8029884-8030676,8030755-8030771
          Length = 269

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 56  HALSRRTLQTGVRLCNESQYQAGGARVRALEYLVR 160
           HAL+ R L    RL +ES  +A  A     E L+R
Sbjct: 128 HALAERVLLVAARLAHESVARAAAAAREQAERLIR 162


>05_02_0033 +
           5847754-5847982,5848308-5848437,5849038-5849116,
           5849194-5849251,5849732-5850795,5850899-5851003,
           5851369-5851473
          Length = 589

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = +3

Query: 27  DDAEYVLAVRTR*VDALYKQVYACVTRVSTRLEELECGRW 146
           ++ ++ +A+ T   D ++++ Y  +  +ST      CG++
Sbjct: 314 ENYQFAVAIGTLSYDPIFEEEYNVIGNISTETASCSCGQF 353


>03_06_0340 +
           33252677-33252864,33253086-33254442,33254565-33254667,
           33256081-33256171,33257208-33257300,33258316-33258471,
           33258583-33258655
          Length = 686

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +2

Query: 56  HALSRRTLQTGVRLCNESQYQAGG 127
           H+  +++++TG+RL N  +++A G
Sbjct: 583 HSSLQQSMETGIRLRNSPKFRANG 606


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,231,012
Number of Sequences: 37544
Number of extensions: 55769
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)