Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L17
         (165 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-7|CAA93769.1|  618|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AB023424-1|BAA82800.1|  618|Caenorhabditis elegans kel-1 protein.      25   5.5  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U88314-8|AAF99888.1|  249|Caenorhabditis elegans Pharyngeal glan...    25   9.5  
L07144-7|AAK21444.2|  646|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    25   9.5  
AF038609-6|AAK29795.1|  245|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z69902-7|CAA93769.1|  618|Caenorhabditis elegans Hypothetical
           protein C47D12.7 protein.
          Length = 618

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +2

Query: 50  SAHALSRRTLQTGVRLCNESQYQAGG----ARVRALEY 151
           S  +L +R  ++GV +CN   Y  GG     RVR++++
Sbjct: 359 SCASLPQRRCRSGVSMCNGYVYTTGGFNGAQRVRSVDF 396


>AB023424-1|BAA82800.1|  618|Caenorhabditis elegans kel-1 protein.
          Length = 618

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +2

Query: 50  SAHALSRRTLQTGVRLCNESQYQAGG----ARVRALEY 151
           S  +L +R  ++GV +CN   Y  GG     RVR++++
Sbjct: 359 SCASLPQRRCRSGVSMCNGYVYTTGGFNGAQRVRSVDF 396


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 22  PSTMPSTCLQCARAKSTHSTNRCTL 96
           P   P + +QC      H + RCTL
Sbjct: 653 PFNQPESNVQCMACMGPHKSMRCTL 677


>U88314-8|AAF99888.1|  249|Caenorhabditis elegans Pharyngeal gland
           toxin-relatedprotein 2 protein.
          Length = 249

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 34  PSTCLQCARAKSTHSTNRCT 93
           P TC +C+   ST +T  CT
Sbjct: 128 PKTCGRCSSFSSTPTTGTCT 147


>L07144-7|AAK21444.2|  646|Caenorhabditis elegans Hypothetical
          protein R05D3.9 protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 83 FVECVDLARAHCKHVLGI 30
          FV  + + R HC H++G+
Sbjct: 20 FVAFIGVVRCHCPHMMGV 37


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 22  PSTMPSTCLQCARAKSTHSTNRCTL 96
           P   P + +QC      H + RCTL
Sbjct: 653 PFNQPESNVQCMACMGPHKSMRCTL 677


>AF038609-6|AAK29795.1|  245|Caenorhabditis elegans Hypothetical
           protein C54E4.1 protein.
          Length = 245

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 13  PGSPSTMPSTCLQCARAKSTHSTNRCT 93
           PG+PST+P+  L   RA S  S    T
Sbjct: 106 PGTPSTIPNPQLTQRRATSFRSNGSST 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,789
Number of Sequences: 27780
Number of extensions: 43310
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)