Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L15
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    26   2.7  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   3.6  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   6.3  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   6.3  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -3

Query: 132 VIKAFSISHNIFTTHYGMKFSIFMKNNTKSFKFSM 28
           +++A + + +I  TH GMKF +F +  T + +  +
Sbjct: 59  LLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQL 93


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 279 KLKKELKMLNYLLLFFFAHIAYGDEQKRPNFVVFITD 389
           +L+KE+K L      +F  + +GD  + PNF V I D
Sbjct: 312 RLEKEIKQL------WFERVLHGDPARLPNFKVKIED 342


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 407 QHYILIVSYKNNKIWSFLFIAICDVR 330
           Q+Y+L  + K +K+WSF+     D++
Sbjct: 270 QNYVLQQTRKESKLWSFIKKVFHDIK 295


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 446 SNQADILNTNHSTQHYILIVSYKNNKIWSFLF 351
           +N +DI+N+   +   IL +S +    W FLF
Sbjct: 216 ANPSDIINSKSFSSLGILALSKEARDAWQFLF 247


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 351 EQKRPNFVVFITDD 392
           E K+PNF+V + DD
Sbjct: 8   ESKKPNFLVIVADD 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,045
Number of Sequences: 5004
Number of extensions: 37139
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)