Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L15
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040659-5|AAO12389.1|  674|Caenorhabditis elegans Half transpor...    33   0.11 
AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transpor...    33   0.11 
Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    27   9.9  

>AF040659-5|AAO12389.1|  674|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform b protein.
          Length = 674

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 300 FLVLFLIYKNKAINKQFITILMWHGGH 220
           F+V+ LI+ N+ +    +TI++W+GGH
Sbjct: 425 FVVIGLIWSNELLQMGILTIVLWYGGH 451


>AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform a protein.
          Length = 815

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 300 FLVLFLIYKNKAINKQFITILMWHGGH 220
           F+V+ LI+ N+ +    +TI++W+GGH
Sbjct: 425 FVVIGLIWSNELLQMGILTIVLWYGGH 451


>Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical
           protein C08F8.9 protein.
          Length = 55

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 127 YYDPFKWSLVKSVGFFTVGVLIA 195
           Y DPF WS+ K V  F VGV++A
Sbjct: 22  YNDPFFWSVFKGVIGFGVGVVVA 44


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
 Frame = +3

Query: 294 LKMLNYLLLFFF---------AHIAYGDEQKRPNFVVFITDDQDVVLGGM 416
           L++ NY ++F+            I + D Q   N ++ +TDDQD+ LG M
Sbjct: 5   LRISNYFIIFYVLFLIIPIKVTSIHFVDSQH--NVILILTDDQDIELGSM 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,681,799
Number of Sequences: 27780
Number of extensions: 205952
Number of successful extensions: 493
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)