Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L12
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 305 1e-83
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 299 8e-82
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 298 2e-81
10_07_0065 - 12527642-12528178,12531443-12531718 31 0.54
01_05_0710 + 24492337-24493053 31 0.94
03_05_0145 + 21254448-21255488 29 2.2
10_01_0099 - 1202668-1203023,1203097-1206037 29 2.9
01_05_0674 - 24187820-24188713,24188809-24189204 29 2.9
01_01_1101 + 8731427-8732938 29 2.9
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 29 3.8
10_08_0510 + 18430580-18431781,18433176-18433554 29 3.8
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 29 3.8
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 3.8
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 29 3.8
04_01_0393 - 5154558-5154857,5155008-5155072,5158734-5159047,515... 28 5.0
12_01_0843 + 7891622-7892524 28 6.6
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 6.6
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 28 6.6
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.6
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 27 8.7
04_04_0950 + 29609484-29611025 27 8.7
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 305 bits (750), Expect = 1e-83
Identities = 135/200 (67%), Positives = 165/200 (82%)
Frame = +2
Query: 8 VDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTD 187
+DKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDGKVRTD
Sbjct: 36 LDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVRTD 95
Query: 188 PTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYL 367
TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKVR V G K +P+L
Sbjct: 96 KTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFL 155
Query: 368 VTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLGRVGTIVSRE 547
T+DGRT+RYPDPLIK ND++++D+ TNKI+DFIKFD GN+ M+TGGRN GRVG I SRE
Sbjct: 156 NTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVIKSRE 215
Query: 548 RHPGSFDIVHVKDSTGHTFA 607
+H GSF+ +HV+D+ GH FA
Sbjct: 216 KHKGSFETIHVEDALGHQFA 235
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 299 bits (735), Expect = 8e-82
Identities = 130/200 (65%), Positives = 164/200 (82%)
Frame = +2
Query: 8 VDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTD 187
+DKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGKVRTD
Sbjct: 20 LDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTD 79
Query: 188 PTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYL 367
TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKVR V G K +PYL
Sbjct: 80 KTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYL 139
Query: 368 VTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLGRVGTIVSRE 547
T+DGRT+RYPDPLIK ND++++D+ TNKI+DFIKFD GN+ M+TGGRN GRVG I +RE
Sbjct: 140 NTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNRE 199
Query: 548 RHPGSFDIVHVKDSTGHTFA 607
+H GSF+ +HV+D+ GH FA
Sbjct: 200 KHKGSFETIHVEDALGHAFA 219
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 298 bits (732), Expect = 2e-81
Identities = 129/200 (64%), Positives = 164/200 (82%)
Frame = +2
Query: 8 VDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTD 187
+DKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGKVRTD
Sbjct: 20 LDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTD 79
Query: 188 PTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYL 367
TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKVR V G K +PYL
Sbjct: 80 KTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYL 139
Query: 368 VTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLGRVGTIVSRE 547
T+DGRT+RYPDP+IK ND++++D+ TNKI+DFIKFD GN+ M+TGGRN GRVG I +RE
Sbjct: 140 NTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNRE 199
Query: 548 RHPGSFDIVHVKDSTGHTFA 607
+H GSF+ +HV+D+ GH FA
Sbjct: 200 KHKGSFETIHVEDALGHQFA 219
>10_07_0065 - 12527642-12528178,12531443-12531718
Length = 270
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = -1
Query: 595 PGGVLDVHDVEGAGVALARDDGADATQIPAAGDHAEVAGVELDEVHDLVGGDVELH 428
P G V V A A DDGA A + PA G+ A V +E GD +H
Sbjct: 191 PAGGAVVELVRAAARAGRDDDGARARRRPAGGEEGVAAAVRGEEKSQAARGDGAVH 246
>01_05_0710 + 24492337-24493053
Length = 238
Score = 30.7 bits (66), Expect = 0.94
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = -2
Query: 510 LPPVIMQRLPESNLMKSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATR 331
L P +RLP S L L M + T +F L++ + +RPS + LLG + +R
Sbjct: 76 LLPGSTERLPFSPLAAH---LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSR 132
Query: 330 RTLHSLYLASSGVIRWI 280
R ++ V+RW+
Sbjct: 133 RRARE----AASVVRWL 145
>03_05_0145 + 21254448-21255488
Length = 346
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 322 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHL 444
+G ARR P++R A A P PA R G HL
Sbjct: 117 KGRARRRTPEQRRPKEAAGNGRARSPSPASAQRRYGGGEHL 157
>10_01_0099 - 1202668-1203023,1203097-1206037
Length = 1098
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 386 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMIT 502
T R PD + ++ LD+S N + I GNL MIT
Sbjct: 123 TGRMPDEISELQRLTMLDLSYNNLTGHIPASVGNLTMIT 161
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 328 AARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQD 456
AA R P A A AP P P+HQ ++ +RH D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 136 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVHLV 2
+HL+ L P H R A A L+ + R P R HAA LV V
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRV 73
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 406 AHQGERLGAARHLHQQDHGLHQVR--LRQPLH 495
A QGE GAAR +HQ+ G R +RQ LH
Sbjct: 399 AAQGELAGAARQVHQRRRGRRGQRGHVRQELH 430
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 459 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 310
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 193 MDYLCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 459 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 310
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 337 RDRPQERAVPGDARRAHAP--VPGPAHQGERLGAARHLHQQDHGLHQV-RLRQPLHDHRR 507
++R ++R P D+RR H P PG + + A + L + V R R P+ + +R
Sbjct: 375 KERERDRKHPADSRREHTPPRTPGDRRRSSSVRAEKPLRRPSPRRDAVHRHRSPVKEIKR 434
Query: 508 Q 510
+
Sbjct: 435 E 435
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 319 VQGAARRDRPQERAVPGDARRAHAPVPG 402
++GA RR R E+A+P + AP PG
Sbjct: 4 LRGAKRRKRQPEKALPAAGQAMPAPAPG 31
>04_01_0393 -
5154558-5154857,5155008-5155072,5158734-5159047,
5159148-5159338
Length = 289
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 440 ISTNKIMD-FIKFDSGNLCMITGGRNLGRVGTIVSRERH-PG-SFDIVHV 580
I NK++D F FD + + GG G + I+SR +H G +FD+ HV
Sbjct: 111 IVINKLLDRFHGFDGVGVLVDVGGGTGGTLEMIMSRHKHITGVNFDLPHV 160
>12_01_0843 + 7891622-7892524
Length = 300
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 301 RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGE 420
R V G R +P++ A AHAP P P+ G+
Sbjct: 37 RKAVSGSGGGRRGRKPKKAATAATLAPAHAPAPAPSVAGK 76
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 316 AVQGAARRDRPQERAVPGDARRA-HAPVPGPAHQGERLGAA 435
A +G R+ R P DA A HAP P P +G + GAA
Sbjct: 98 APRGRGRKSRRGRPEPPSDAGAAPHAP-PSPPRRGAKKGAA 137
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +1
Query: 304 SQVQAVQGAARRDRPQERAVPGDARRA---HAPVPGPAHQGERLGAARHLHQQDHG 462
++ A G A R RP P A A H P P + +R RH H HG
Sbjct: 53 TETPAADGDAARKRPSAGDAPAPAPLADKRHRPNPPSSGSRDRDRHHRHGHSHSHG 108
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 245 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 349
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/38 (31%), Positives = 27/38 (71%)
Frame = -2
Query: 525 TRPRFLPPVIMQRLPESNLMKSMILLVEMSSCTESFTL 412
++PR PP++ +R P+++L + ++ L + SS + SF++
Sbjct: 22 SQPRSPPPLLARRPPKTSLSQQLLRL-DASSSSSSFSV 58
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 150 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 22
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,385
Number of Sequences: 37544
Number of extensions: 378687
Number of successful extensions: 1505
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -