Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L11
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    30   0.18 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   8.9  

>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 126 IDKYKLILGESRIQIFLCSMAETSSGDLEVFDI 224
           +DK KLIL  +  +IFL  ++   S  LEVF++
Sbjct: 438 VDKNKLILVSNDSEIFLIELSRLDSRQLEVFEL 470


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 463  LRNYREIFVGGKTDEVKNKICCVFLGFMI 377
            L + R+IF+G   D     + C F  F++
Sbjct: 1145 LNSARKIFIGYMLDGFYQSVICFFFSFLV 1173


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 169 YFFALWQKRVVGT*KCSIFIKYPYILSIYL 258
           ++F LW   + G   C +F   P++L I L
Sbjct: 304 WYFPLWHMGISGYEACILFELSPFLLGIPL 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,479
Number of Sequences: 5004
Number of extensions: 31836
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)