Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L10
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 275 3e-75
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 271 4e-74
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 43 4e-05
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 29 0.68
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 27 2.1
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 2.7
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 4.8
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 6.3
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 25 6.3
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 25 8.3
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 25 8.3
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 8.3
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 275 bits (675), Expect = 3e-75
Identities = 131/180 (72%), Positives = 146/180 (81%)
Frame = +3
Query: 12 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 191
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 192 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 371
KDPKRLFEGNA DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 372 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQVGG 551
AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR Q GG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 271 bits (665), Expect = 4e-74
Identities = 131/180 (72%), Positives = 146/180 (81%)
Frame = +3
Query: 12 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 191
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 192 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 371
KDPKRLFEGNA DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 372 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQVGG 551
AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR Q GG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR-SQEGG 183
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 42.7 bits (96), Expect = 4e-05
Identities = 27/123 (21%), Positives = 49/123 (39%)
Frame = +3
Query: 75 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 254
+++ ++ Y + + E + + R+ A L L+ DP RL N
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 255 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 434
K D + RRL + K +++ + A LI Q H+RV V+ P+
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147
Query: 435 FIV 443
++V
Sbjct: 148 YLV 150
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 28.7 bits (61), Expect = 0.68
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 224 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL 96
SI F+ S RIL Q T LT S + HF ++ TIL
Sbjct: 18 SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 2.1
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -3
Query: 326 KTALQEVLNLQTEHI-IQFHLFLIKHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDA 150
KT++ E+ N H+ +F ++K + Q QSL E FT SL
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246
Query: 149 SERVLDAPHFTLVAETILSDDLQLL 75
+E V+D T +++ +L D + L
Sbjct: 247 NEVVIDRGPNTAMSDIMLYVDSKYL 271
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 270 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 401
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 324 DGAPRSPQSSNRAHNPVSSVSHQALRP 244
DGA S Q+ AHNP +SVS + +RP
Sbjct: 90 DGA--SSQNDAFAHNPSTSVSVELVRP 114
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 359 VNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEEEPA 532
V+ + P +++ + P GG HS + RP R + LLS A + + E+P+
Sbjct: 113 VSVNAPIVNEV-SLQAPMKGGSHSSIVRPQAKRSSSRLLSTDAFSQFISSFSPPEKPS 169
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 572 LPRRHCGPADL-ALAQVLPLDATGPAAAERRLQREVNVLAGVQADDERRNVH 420
LP H A+L ++ +LP +GP +E+ L+ E V ++D+ +++
Sbjct: 227 LPINHAILAELQSVFNLLPNIFSGPVVSEQALESEAQRAFNVNSNDQLMSIY 278
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 332 SGVQGWSCEVNPSCP 376
+G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 494 RRPA-RSRQEEEPAQGPGRRGHNDDEED*PIN 586
++PA R+R+ +E + G+R N D + P+N
Sbjct: 87 KKPAKRTRKRKEDGEEGGKRKRNQDPANNPLN 118
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 551 PADLALAQVLPLDATGPA 498
P D +L+QV+PLD P+
Sbjct: 415 PPDFSLSQVMPLDLIAPS 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,951
Number of Sequences: 5004
Number of extensions: 46885
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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