Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L10
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 249 1e-66
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 248 2e-66
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 247 4e-66
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 130 8e-31
07_03_1357 - 25982861-25983068,25983354-25983361 64 1e-10
07_03_1358 - 25984897-25984997,25985623-25985650 47 1e-05
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.30
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 30 1.6
02_05_1008 - 33461225-33462334 29 2.8
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 3.7
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 28 4.9
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 4.9
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 28 6.5
05_03_0060 - 7905455-7906216,7906723-7906887 28 6.5
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 28 6.5
01_05_0433 - 22094784-22095659 28 6.5
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 8.5
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 249 bits (609), Expect = 1e-66
Identities = 117/182 (64%), Positives = 142/182 (78%)
Frame = +3
Query: 21 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 200
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 201 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 380
+R+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 286 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 345
Query: 381 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQVGGATM 560
LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GG +
Sbjct: 346 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDV 405
Query: 561 TT 566
+
Sbjct: 406 NS 407
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 248 bits (608), Expect = 2e-66
Identities = 117/177 (66%), Positives = 140/177 (79%)
Frame = +3
Query: 21 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 200
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 201 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 380
+R+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 129
Query: 381 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQVGG 551
LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GG
Sbjct: 130 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 186
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 247 bits (605), Expect = 4e-66
Identities = 117/175 (66%), Positives = 139/175 (79%)
Frame = +3
Query: 27 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 206
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 207 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 386
+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LI
Sbjct: 95 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLI 154
Query: 387 RQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQVGG 551
RQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GG
Sbjct: 155 RQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 209
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 130 bits (314), Expect = 8e-31
Identities = 68/127 (53%), Positives = 83/127 (65%)
Frame = +3
Query: 21 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 200
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 201 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 380
+R+FEG A E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 381 LIRQRHI 401
LIRQ HI
Sbjct: 119 LIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = +3
Query: 402 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQVGG 551
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN + GG
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGG 52
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 21 FSKTYVTPRRPFEKARLDQELKIIGEYG 104
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 318 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 443
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/65 (26%), Positives = 23/65 (35%)
Frame = +2
Query: 347 WSCEVNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEEE 526
W P P L + SC S RPPG R +S V R + + +
Sbjct: 4 WLIRPKPISPPLSAAKTPSCSCQANSSSSALRPPGARADSVSVSPVHARGGESAAAMDSR 63
Query: 527 PAQGP 541
P + P
Sbjct: 64 PREAP 68
>02_05_1008 - 33461225-33462334
Length = 369
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +3
Query: 261 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 440
E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS +
Sbjct: 163 ELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNL 216
Query: 441 VRLDSGKHIDFSLKSPFGGGR 503
+ +DSG+ + + FG GR
Sbjct: 217 L-IDSGRRVKI---ADFGVGR 233
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 300 IEDFLERRLQTQVFKAGLAKSIHHAR 377
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 332 SGVQGWSCEVNPSCPHLDQTEAY 400
+GV WS VNPS +L TEA+
Sbjct: 107 AGVSTWSLRVNPSSGNLHPTEAH 129
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 75 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 197
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 416 GGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEEEPAQGPGRRGHND 562
GG + RPP R+ L E+ + A EE+PA P R G D
Sbjct: 126 GGRGARGGRPPPPRRRIDLRGELELEIPDAAPAAEEDPAPAPARGGRAD 174
>05_03_0060 - 7905455-7906216,7906723-7906887
Length = 308
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = -3
Query: 545 DLALAQVLPLDATGPAAAERRLQREVNVL----AGVQADDERRNV-HHLLADTNMPLSD 384
D+ALA V +D T PAA R + V + + DERRN+ L +D N + D
Sbjct: 27 DMALAPVFAVDQTSPAALLRLFFHDCQVQGCDGSILLNSDERRNITSELGSDKNFGIRD 85
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 553 APPTWPLR-RFFLLTRPGRPPPNGDFRE 473
APP WPL+ +L P PPP F E
Sbjct: 449 APPGWPLQPPMYLPVTPAPPPPPPAFSE 476
>01_05_0433 - 22094784-22095659
Length = 291
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 508 PGRPPPNGDFREKSMCLPESRRTMNEGMFTTC 413
PGR PP +R K M P RR G C
Sbjct: 48 PGRVPPPPMYRPKPMQAPARRRRSRRGWCCAC 79
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 54 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 188
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,017,588
Number of Sequences: 37544
Number of extensions: 379391
Number of successful extensions: 1265
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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