Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L09
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical p... 213 9e-56
Z92838-2|CAB07408.1| 211|Caenorhabditis elegans Hypothetical pr... 31 0.41
Z69662-3|CAA93502.1| 449|Caenorhabditis elegans Hypothetical pr... 31 0.55
U28929-4|AAA68347.3| 338|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 8.9
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 27 8.9
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical
protein Y57G11C.16 protein.
Length = 154
Score = 213 bits (519), Expect = 9e-56
Identities = 95/131 (72%), Positives = 115/131 (87%)
Frame = +3
Query: 45 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 224
MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ + +KAD+D++KRAGE T
Sbjct: 1 MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60
Query: 225 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 404
EE+ +KIVTIM NP QYKIP+WFLNRQKDI DGK QL S+ +D+KLREDLER+KKIR H
Sbjct: 61 EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120
Query: 405 RGMRHYWGLRV 437
RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131
>Z92838-2|CAB07408.1| 211|Caenorhabditis elegans Hypothetical
protein T03D8.3 protein.
Length = 211
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 429 DPSSDAYPYEHGSSSAFPNLHEAWSLNWKKSTGCICHQQYPFVC*E 292
+P + EHG F N E +S N++ CIC Q++ F C E
Sbjct: 94 NPCPVGFTKEHGCLEEFENSAE-FSRNYQADQHCICDQEHMFNCAE 138
>Z69662-3|CAA93502.1| 449|Caenorhabditis elegans Hypothetical
protein F56D5.3 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -1
Query: 492 WTHQQFYLFCLWS*CVDHGHADPSSDAYPYEHGSSSAFPNLHEAWSLNWKK 340
W H QF + + CVD + + + +A ++ G SS NL W+ K+
Sbjct: 65 WGHGQFGMIITGNVCVDPINLEAAGNAIIFKEGESSKRRNLFSQWAQKIKQ 115
>U28929-4|AAA68347.3| 338|Caenorhabditis elegans Hypothetical
protein F09C12.6 protein.
Length = 338
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = -1
Query: 540 YVCENKN---FLYF*FTSSWTHQQFYLFCLWS*CVDHGHADPSSDAYPYEHGSSSAFPNL 370
+ C N F+Y + + HQ YLFC V +G A+ +S H ++
Sbjct: 275 FTCVNSGINIFVYLSLNAEFRHQFKYLFCNKKRVVTYGEAEKASKGSKTRHHVDLVVHSV 334
Query: 369 H 367
H
Sbjct: 335 H 335
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 261 NPRQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 377
NP YK+ D++ N+ +++ K + +L S++L K +++L
Sbjct: 40 NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 174 VLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 353
VLK+ I L KR + E+E K VT+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 354 DSKLREDLERLKKIR 398
D+ + + + KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 174 VLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 353
VLK+ I L KR + E+E K VT+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 354 DSKLREDLERLKKIR 398
D+ + + + KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 174 VLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 353
VLK+ I L KR + E+E K VT+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 354 DSKLREDLERLKKIR 398
D+ + + + KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,643,915
Number of Sequences: 27780
Number of extensions: 227491
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -