Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L07
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   2.9  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   3.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.8  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    24   8.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    24   8.8  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    24   8.8  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 288 APLGAAPLPGVVVPHAPAVMPCTGSGCTSRQTDSLS 181
           +PL  +P+   V P AP+ +P +     S   +SLS
Sbjct: 551 SPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESLS 586


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = -2

Query: 181 RYMTRHIEIGRVYYRSPERQQLREYSRVTLQEGFQEVQEVKVDSFRQQGRVVGELKQRLV 2
           RY +    +GR Y   P+ +Q + YS       F    + K+  + + G V+G++  +++
Sbjct: 286 RYKSYCSNVGRTYLFDPDSEQQKNYS-------FLVALQKKLFEYCRDGAVIGDIYTKIL 338


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 21  SPTTRPCWRKLSTFTS*TSWNP 86
           +PTT   W   S+FTS TS  P
Sbjct: 198 TPTTTNNWNSSSSFTSSTSSTP 219


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 285 PLGAAPLPGVVVPHAPAVMPCTGSGCTSRQTDSLSAI*RGILKLGAFIIGVQ 130
           P+G AP  G+    A  V+   G+G  S +   L+    G +  G  +IG++
Sbjct: 124 PVGMAPGMGLNAYFAYQVVGYNGTGRVSYREALLAVFVEGFIFTGLTVIGLR 175


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/67 (23%), Positives = 26/67 (38%)
 Frame = +1

Query: 1   ARGAASAHLPLDLAGGNCQXXXXXXXXXXXGV*LYCTHEAAAALDSDNKRAQFQYAASYS 180
           ++G AS  +      G+ Q           G  L  + E+    DSD     F + AS  
Sbjct: 428 SKGLASKSIEFSKNRGHSQKKRKTLSESQAGDTLMSSEESHQLYDSDVMDCCFSFLASIL 487

Query: 181 GEAVSLP 201
             +++LP
Sbjct: 488 THSIALP 494


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 119 LLPLWTPIINAP-NFNMPRHIAERLS 193
           LLP+W+PI   P  F +P     RLS
Sbjct: 78  LLPVWSPIPKGPRRFLLPPKFHYRLS 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,784
Number of Sequences: 5004
Number of extensions: 23242
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)