Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L07
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0152 - 12316242-12316248,12316634-12316800,12317689-123178... 30 0.94
03_05_0756 + 27469002-27469107,27469200-27469369,27470210-274710... 29 2.2
01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395 28 3.8
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 27 5.0
04_04_1582 - 34590698-34591199,34593849-34594690 27 5.0
04_01_0518 - 6795833-6796450,6799940-6800164 27 5.0
01_01_0936 + 7384895-7385047,7385831-7385931,7386499-7386568,738... 27 5.0
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 27 6.6
02_02_0639 - 12503525-12504289 27 6.6
09_04_0506 - 18188785-18190599 27 8.7
07_03_1068 - 23732282-23732409,23733170-23733329,23733432-237335... 27 8.7
01_06_1841 + 40267902-40268485,40269290-40270421 27 8.7
01_01_0483 - 3550429-3551184 27 8.7
>06_02_0152 -
12316242-12316248,12316634-12316800,12317689-12317800,
12317930-12317999,12318535-12318535,12318791-12319144
Length = 236
Score = 29.9 bits (64), Expect = 0.94
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 365 RSAAATQAGPSWPTAGEGDAAPARHTHHSG 276
RS T P+ P + DAA A HTHH G
Sbjct: 90 RSGTPTALMPTAPLRLQIDAADAHHTHHQG 119
>03_05_0756 +
27469002-27469107,27469200-27469369,27470210-27471001,
27471182-27471398,27471972-27472150,27472592-27472833,
27473662-27474052
Length = 698
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 188 LSVCREVQ-PEPVHGITAGACGTTTPGSGAAPSGACDAREQRRLHRL 325
L +C + + P P++G T G CG GS + A DA ++R +
Sbjct: 29 LPLCTDSRAPVPLNGTTLGFCGGGGSGSSSCCGAADDAALRKRFEAM 75
>01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395
Length = 262
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 263 GSGAAPSGACDAREQRRLHRLLAKMAQLE 349
GSGAA S A + +LH LAK +Q+E
Sbjct: 33 GSGAAESKAFWQNQHSQLHEALAKTSQVE 61
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 266 SGAAPSGACDAREQRRLHRLLAKMAQLE 349
SG+APSGA A L L++K A+L+
Sbjct: 508 SGSAPSGAAAANPTAMLSALMSKRAKLQ 535
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 273 APLPGVVVPHAPAVMP 226
AP+PG VVP AP MP
Sbjct: 419 APVPGAVVPGAPVNMP 434
>04_01_0518 - 6795833-6796450,6799940-6800164
Length = 280
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 145 YYRSPERQQLREYSRVTLQEGFQEVQEVKVDSFRQQGRVVGELKQ 11
+Y S RQ +R Y L+ ++++E K ++GR+ E+K+
Sbjct: 162 FYDSMRRQGVRVYRASPLRMDLRQIEEEKKKEEVERGRLQKEIKE 206
>01_01_0936 +
7384895-7385047,7385831-7385931,7386499-7386568,
7386725-7386752,7386791-7386892,7387070-7387164
Length = 182
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 266 SGAAPSGACDAREQRRLHRLLAKMAQLE 349
SG+APSGA A L L++K A+L+
Sbjct: 15 SGSAPSGAAAANPTAMLSALMSKRAKLQ 42
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +2
Query: 119 LLPLWTPIINAPNFNMPRHIAERLSVCREVQPEPVH----GITAG 241
LL LW P ++ + P H +S C V P+ V G+ AG
Sbjct: 219 LLGLWDPYLHISHSLSPSHPLPFMSYCSPVSPDDVQWRYGGVDAG 263
>02_02_0639 - 12503525-12504289
Length = 254
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 260 PGSGAAPSGACDAREQRRLHRLLAKMAQLELQP 358
P +GAA + D RR H A M +LE QP
Sbjct: 46 PSAGAAAAAYEDPMVGRRTHDFPAPMNELEFQP 78
>09_04_0506 - 18188785-18190599
Length = 604
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 279 GAAPLPGVVVPHAPAVMP 226
GAAP PG++ P P V P
Sbjct: 408 GAAPFPGLMQPFPPVVAP 425
>07_03_1068 -
23732282-23732409,23733170-23733329,23733432-23733543,
23733924-23734021,23734207-23734615,23734815-23734966,
23735802-23736010,23736708-23736795,23737353-23737673
Length = 558
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +2
Query: 200 REVQPEPVHGITAGA---CGTTTPGSGAAPSGACDAREQ 307
R ++ P +G G CG PG G+ G ARE+
Sbjct: 30 RALRLPPANGARRGVRCCCGAANPGGGSGGGGGAVAREE 68
>01_06_1841 + 40267902-40268485,40269290-40270421
Length = 571
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 179 AERLSVCREVQPEPVHGITAGACGTTTPGSGAAPSGACDAREQRRLHRLLAKMAQLELQP 358
+ RLS+ + EP++G A G+ S AA + A A Q +A+ A E QP
Sbjct: 126 SRRLSLQELIDVEPINGAKDAATGSQEVSSAAAEAAAAGAAVQG-----VAEAAAAEKQP 180
>01_01_0483 - 3550429-3551184
Length = 251
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 221 VHGITAGACGTTTPGSGAAPSGAC 292
+ + A A TTTPG+G +P AC
Sbjct: 12 ISSVVASAVATTTPGAG-SPCAAC 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,856,280
Number of Sequences: 37544
Number of extensions: 201428
Number of successful extensions: 860
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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