Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L06
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 28 0.91
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 26 2.8
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 26 3.7
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 25 4.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 4.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 6.4
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.4
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.4
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 8.4
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 8.4
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 8.4
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 8.4
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 27.9 bits (59), Expect = 0.91
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +3
Query: 180 HKKKSLDTQQKSEEFQSTKLKCLDKSYVHSTIVNNSIKDISEMSSNEASTK 332
HK KS KS++ S+ L + KS HS + NN K S S N +K
Sbjct: 292 HKSKSSTALFKSKKDSSSSLNKMHKSESHSAL-NNLHKSESGTSLNNRRSK 341
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 180 HKKKSLDTQQKSEEFQSTKLKCLDKSYVHSTIVNNSIKDISEMSSNEAS 326
H KK DT + F++TKL C + + + I I +++ + S
Sbjct: 120 HSKKEGDTIELRGPFKTTKLDCTKYPRIVAIVAGTGIAPIYQLAQSVKS 168
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +3
Query: 267 STIVNNSIKDISEMSSNEASTKSREEVIAMREXXXXXXXXXXXXXXVNEVKNDPVVKETK 446
S I+N + + E ++N+ S KS + + ++E ++ +K+
Sbjct: 60 SGIINGAKLIVKESATNQ-SGKSSSSISPQSKKIKVALQLPGAARIIDEASSETSIKQLL 118
Query: 447 KNDNNITKVDHV 482
+ + +TKV HV
Sbjct: 119 ERHSLLTKVSHV 130
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 4.8
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +3
Query: 183 KKKSLDTQQKSEEFQSTKLKCLDKSYVHSTIVNNSIKDISEMSSNEASTKSREEVIAMRE 362
K ++ ++ E+ Q T +K D + ++KD+ E + E S K EE I M+E
Sbjct: 134 KNSPIENEKILEDDQHTAMKEKDNES------DKTMKDVEEKT--EPSLKKEEEDIQMKE 185
Query: 363 XXXXXXXXXXXXXXVNE-VKNDPVVKETKKND 455
VNE + D K+ + +D
Sbjct: 186 PLDSQDTGAVSASSVNEGFRADQKSKDGETSD 217
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 4.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 479 MIYFCNIIIVFFSFFNYWIIFNLI 408
++YF ++I+ F + ++IIFN I
Sbjct: 744 IMYFTDLILFFLDTYLWYIIFNTI 767
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 438 ETKKNDNNITKVDHVTEVE 494
ET ND+++ + DHV+ VE
Sbjct: 1983 ETSDNDDHLEEADHVSPVE 2001
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 500 SIFHFSHMIYFCNIIIVFFSF 438
S+FH SH+I F + F SF
Sbjct: 169 SLFHISHLISFHFLFFSFLSF 189
>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 159
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3
Query: 216 EEFQSTKLKCLD-----KSYVHSTIVNNSIKDISEMSSNEASTKSREEVIA 353
+EF+ K D K +H+ ++ KDI S E+STK+ V+A
Sbjct: 74 DEFEEIDAKTFDPHQKYKKVIHAIEQSSGSKDIHYFSYEESSTKTVYYVLA 124
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 482 HMIYFCNIIIVFFSFFNYWIIFNLI 408
+ +Y I V SFF W+IF+ I
Sbjct: 116 NFLYILWIFSVAMSFFTAWVIFSTI 140
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 482 HMIYFCNIIIVFFSFFNYWIIFNLI 408
+ +Y I V SFF W+IF+ I
Sbjct: 116 NFLYILWIFSVAMSFFTAWVIFSTI 140
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 482 HMIYFCNIIIVFFSFFNYWIIFNLI 408
+ +Y I V SFF W+IF+ I
Sbjct: 116 NFLYILWIFSVAMSFFTAWVIFSTI 140
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 482 HMIYFCNIIIVFFSFFNYWIIFNLI 408
+ +Y I V SFF W+IF+ I
Sbjct: 116 NFLYILWIFSVAMSFFTAWVIFSTI 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,272,004
Number of Sequences: 5004
Number of extensions: 16771
Number of successful extensions: 77
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -