Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L06
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1110 - 9137529-9137918,9138011-9138112,9138289-9138381,913...    28   3.7  
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888     27   8.5  

>06_01_1110 -
           9137529-9137918,9138011-9138112,9138289-9138381,
           9138465-9138719,9139002-9139258,9139341-9139445,
           9139555-9139834,9139932-9140212,9140362-9140482
          Length = 627

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 414 VKNDPVVKETKKNDNNITKVDH 479
           +K+ P  K++KKN  N+T V H
Sbjct: 131 LKHKPATKKSKKNTENVTSVTH 152


>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
          Length = 748

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 183 KKKSLDTQQKSEEFQSTKLKCLDKSYVHSTIVNNSIKDISEMSSNEA 323
           +KK    QQK E+      K   ++Y    IVN+  K I+E+S + A
Sbjct: 34  QKKVWSLQQKLEDANKRFAKVTTENYNLRNIVNSKDKVITELSESAA 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,711,933
Number of Sequences: 37544
Number of extensions: 75639
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)