Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L06
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr...    32   0.20 
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p...    32   0.20 
U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine rece...    30   1.1  
AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine r...    30   1.1  
Z92813-5|CAB07285.1|  425|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z68270-9|CAE54911.1|  307|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z68270-8|CAC35869.1|  309|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z68270-7|CAA92571.2|  109|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF202930-1|AAK69380.1|  109|Caenorhabditis elegans Ny protein.         27   7.6  

>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +3

Query: 183 KKKSLDTQQKSEEF-QSTKLKCLDKSYVHSTIVN--NSIKDISEMSSNEASTKSREEV 347
           K+K L+ ++K  E  QS + K  +K Y+  TIVN  N ++ + E   N+  TK   +V
Sbjct: 337 KRKVLEFEEKIRECEQSIRKKTSEKKYMERTIVNAKNEVRILLEKQGNQDLTKRLTKV 394


>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +3

Query: 183 KKKSLDTQQKSEEF-QSTKLKCLDKSYVHSTIVN--NSIKDISEMSSNEASTKSREEV 347
           K+K L+ ++K  E  QS + K  +K Y+  TIVN  N ++ + E   N+  TK   +V
Sbjct: 337 KRKVLEFEEKIRECEQSIRKKTSEKKYMERTIVNAKNEVRILLEKQGNQDLTKRLTKV 394


>U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein48 protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/57 (26%), Positives = 33/57 (57%)
 Frame = -3

Query: 397 LFFVFNLASFLASLIAITSSLDLVEASFEDISDISFILLLTIVECT*LLSRHLSFVL 227
           L   FN+ SF++  +  T+ L ++  S++  ++  F +L+  V CT +   H++F++
Sbjct: 11  LILYFNIVSFISFFLNCTTILLIIFKSYK-FNNFRFFVLVFQVTCT-ITDLHINFIM 65


>AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein47 protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/57 (26%), Positives = 33/57 (57%)
 Frame = -3

Query: 397 LFFVFNLASFLASLIAITSSLDLVEASFEDISDISFILLLTIVECT*LLSRHLSFVL 227
           L   FN+ +F++  +  T+ L ++  S++  ++  F +L+  V CT +   HL+F++
Sbjct: 11  LILYFNIVAFISFFLNFTTILLIIFKSYK-FNNFRFFVLVFQVTCT-ITDLHLNFIM 65


>Z92813-5|CAB07285.1|  425|Caenorhabditis elegans Hypothetical
           protein T28A8.5 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 500 SIFHFSHMIYFCNIIIVFFSFFNYWIIFNLI 408
           ++ HF+ ++ F   I +F  FF++ ++F+LI
Sbjct: 245 ALLHFTLILIFFGFICLFSPFFHFSVVFSLI 275


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 497 IFHFSHMIYFCNIIIVFFSFFNYWIIFNLI 408
           + H+S +I+ C+I ++  SF  YWI+F  I
Sbjct: 475 LVHWSVLIFVCSIWVISASF--YWIMFTTI 502


>Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical
           protein T01B4.2c protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 183 KKKSLDTQQKSEEFQSTKLKCLDKSYVHSTIVNNSIKDISEMSSNEASTKS 335
           +K +LD  Q S+  +  + K + K Y HS I +    DI + S+    T+S
Sbjct: 9   RKSALDDDQTSQAMKLLE-KYIRKKYRHSVIFSQDSADIEQSSTPVGHTQS 58


>Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical
           protein T01B4.2b protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 183 KKKSLDTQQKSEEFQSTKLKCLDKSYVHSTIVNNSIKDISEMSSNEASTKS 335
           +K +LD  Q S+  +  + K + K Y HS I +    DI + S+    T+S
Sbjct: 30  RKSALDDDQTSQAMKLLE-KYIRKKYRHSVIFSQDSADIEQSSTPVGHTQS 79


>Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical
           protein T01B4.2a protein.
          Length = 757

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 183 KKKSLDTQQKSEEFQSTKLKCLDKSYVHSTIVNNSIKDISEMSSNEASTKS 335
           +K +LD  Q S+  +  + K + K Y HS I +    DI + S+    T+S
Sbjct: 54  RKSALDDDQTSQAMKLLE-KYIRKKYRHSVIFSQDSADIEQSSTPVGHTQS 103


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 198 DTQQKSEEFQSTKLKCLDKSYVHSTIVNN 284
           D  + SE F+ +  +C+ K Y+H   VN+
Sbjct: 222 DLNELSEVFEKSGFRCVRKEYLHRMTVNH 250


>Z68270-9|CAE54911.1|  307|Caenorhabditis elegans Hypothetical
           protein ZC410.7c protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 177 EHKKKSLDTQQKSEEFQSTKLKCLDK-SYVHSTIVNNSIKDISEMSSNEASTKSREE 344
           EH K  +D    +++ QS++L    K S +    VN  +KDI   S +E  +++REE
Sbjct: 41  EHTKP-IDLGSLTKKDQSSRLSAAAKASSIPREPVNAELKDIFYTSKHEWYSRTREE 96


>Z68270-8|CAC35869.1|  309|Caenorhabditis elegans Hypothetical
           protein ZC410.7b protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 177 EHKKKSLDTQQKSEEFQSTKLKCLDK-SYVHSTIVNNSIKDISEMSSNEASTKSREE 344
           EH K  +D    +++ QS++L    K S +    VN  +KDI   S +E  +++REE
Sbjct: 41  EHTKP-IDLGSLTKKDQSSRLSAAAKASSIPREPVNAELKDIFYTSKHEWYSRTREE 96


>Z68270-7|CAA92571.2|  109|Caenorhabditis elegans Hypothetical
           protein ZC410.7a protein.
          Length = 109

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 177 EHKKKSLDTQQKSEEFQSTKLKCLDK-SYVHSTIVNNSIKDISEMSSNEASTKSREE 344
           EH K  +D    +++ QS++L    K S +    VN  +KDI   S +E  +++REE
Sbjct: 41  EHTKP-IDLGSLTKKDQSSRLSAAAKASSIPREPVNAELKDIFYTSKHEWYSRTREE 96


>AF202930-1|AAK69380.1|  109|Caenorhabditis elegans Ny protein.
          Length = 109

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 177 EHKKKSLDTQQKSEEFQSTKLKCLDK-SYVHSTIVNNSIKDISEMSSNEASTKSREE 344
           EH K  +D    +++ QS++L    K S +    VN  +KDI   S +E  +++REE
Sbjct: 41  EHTKP-IDLGSLTKKDQSSRLSAAAKASSIPREPVNAELKDIFYTSKHEWYSRTREE 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,641,046
Number of Sequences: 27780
Number of extensions: 86101
Number of successful extensions: 383
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)