Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L06
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   5.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 60  RSKLYIPYDLTL 25
           RS LY+P+ LTL
Sbjct: 257 RSNLYLPFHLTL 268



 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 240 KCLDKSYVHSTIVNNSIKDISEMSSNEASTKSRE 341
           KC+          + S +++S  S+N+ S+ SRE
Sbjct: 590 KCMSPINGSGASGSGSAENLSSGSNNQTSSASRE 623


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 60  RSKLYIPYDLTL 25
           RS LY+P+ LTL
Sbjct: 252 RSNLYLPFHLTL 263


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 265 CT*LLSRHLSFVL*NSS 215
           CT +L RHL F+  +SS
Sbjct: 216 CTLILGRHLGFLKPDSS 232


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 405 VNEVKNDPVVKETKKNDNN 461
           VN  +ND +     +NDNN
Sbjct: 415 VNNNQNDNIQNTNNQNDNN 433


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 476 IYFCNIIIVFFSFFNYWIIFNLI 408
           +YF N+  VF   FN   +  LI
Sbjct: 235 VYFLNMASVFMRIFNLICMMLLI 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,623
Number of Sequences: 438
Number of extensions: 1135
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)