Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L04
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 89 6e-19
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 89 6e-19
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 27 2.1
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 26 4.7
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 26 4.7
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 26 4.7
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 26 4.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 6.3
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch... 26 6.3
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 6.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 6.3
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 8.3
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 8.3
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 8.3
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 89.0 bits (211), Expect = 6e-19
Identities = 39/72 (54%), Positives = 53/72 (73%)
Frame = +1
Query: 22 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKG 201
LKEY+V+GRK+P+E EP P L++MR+F+P+ VAKSR+WYFL+ + K KK TGEIV+I
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62
Query: 202 NSXKRKSWXKXF 237
S + K F
Sbjct: 63 ISEPKPLKAKVF 74
Score = 48.0 bits (109), Expect = 1e-06
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = +2
Query: 248 FGIWLRYESRSGVHNMYREYRD 313
FGIW+RY+SRSG HNMY+E+RD
Sbjct: 74 FGIWIRYDSRSGTHNMYKEFRD 95
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 89.0 bits (211), Expect = 6e-19
Identities = 39/72 (54%), Positives = 53/72 (73%)
Frame = +1
Query: 22 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKG 201
LKEY+V+GRK+P+E EP P L++MR+F+P+ VAKSR+WYFL+ + K KK TGEIV+I
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62
Query: 202 NSXKRKSWXKXF 237
S + K F
Sbjct: 63 ISEPKPLKAKVF 74
Score = 48.0 bits (109), Expect = 1e-06
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = +2
Query: 248 FGIWLRYESRSGVHNMYREYRD 313
FGIW+RY+SRSG HNMY+E+RD
Sbjct: 74 FGIWIRYDSRSGTHNMYKEFRD 95
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/86 (22%), Positives = 32/86 (37%)
Frame = +3
Query: 390 FPITKKSKFPKKGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFPTNPKPKEIPRXX 569
F I + +K LN + V + V + I+ +V PK+ P
Sbjct: 33 FHIETANNEEEKDANVILNKSVKMEVEEVNGHVDSSSTETDIEMQVIQQPTIPKKPPVSA 92
Query: 570 RWPDPKXRRFXXNXQASXNTFAYKRP 647
P+ R N Q + +T ++RP
Sbjct: 93 HRRGPRKHRGNANSQLNLSTADHQRP 118
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 372 QELCAPFPITKKSKFPKKGLGTSLNSN 452
++L +P + KFP+K + TSLN N
Sbjct: 750 KQLKQTYPGVRSLKFPQKSIITSLNKN 776
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +3
Query: 396 ITKKSKFPKKGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFPTNP 542
I S P +G+ S PV P ++KP FP+NP
Sbjct: 461 INGNSPSPNEGVFQGSFSPESAPVNNHAFPHTSRMQIPYMKPNAFPSNP 509
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 377 ALCTISNYQEVQVPKKRVGHKFKFQRAQARGPIWFPGSG 493
A+C +SN + R+ HKF ++ W+ G G
Sbjct: 378 AVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 416
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 377 ALCTISNYQEVQVPKKRVGHKFKFQRAQARGPIWFPGSG 493
A+C +SN + R+ HKF ++ W+ G G
Sbjct: 374 AVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 412
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 25 KEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWY 141
+E V+ + E P +R +SP+ ++ S FWY
Sbjct: 470 QEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508
>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
Crs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 229
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 272 TRNATRYQKXFLXFLXQDFLFXEFPLMDT-ISPVVFLNFF 156
T+N +Y+K L L D P +++ ++P++F + F
Sbjct: 164 TKNLEKYEKIVLALLNFDIYVISLPSVESFLTPLIFQHVF 203
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 396 ITKKSKFPKKGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFPTNPK 545
+T S KG TSLNS PK G + + + + V TNPK
Sbjct: 231 LTSPSTIDPKGYLTSLNSMVPKNANDLG----DIRKARKLLQSVIETNPK 276
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +3
Query: 423 KGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFPTNP 542
KGL T +S A FG P Q F +P F P
Sbjct: 501 KGLSTDASSGAKSNTPVFGQPSTFGQAPVFGQPSAFGQAP 540
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 109 DPIVAKSRFWYFLRQLKKFK 168
D ++ RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = -1
Query: 419 WELGL-LGNWKWCTELLCLSSQNFKT 345
WE GN CT LC S +FKT
Sbjct: 44 WEYSKSFGNAYICTSFLCFHSDDFKT 69
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -1
Query: 239 LXFLXQDFLFXEFPLMDTISPVVFLNFFNCLKKY 138
+ ++ Q +F E P+ ++ ++FL +NC Y
Sbjct: 188 IGYVIQRVVFSERPIPQSLFLMIFLTLWNCFIPY 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,667
Number of Sequences: 5004
Number of extensions: 68200
Number of successful extensions: 210
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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