Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L04
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-9|AAB92041.2| 180|Caenorhabditis elegans Ribosomal pro... 82 3e-16
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 37 0.013
Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical pr... 36 0.039
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 35 0.051
Z75549-1|CAA99917.1| 424|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p... 30 1.9
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 30 1.9
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical ... 29 3.4
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 29 3.4
Z35663-6|CAD82917.1| 606|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 29 4.4
Z69791-3|CAA93662.1| 924|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z69791-2|CAA93661.2| 919|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z69791-1|CAA93660.1| 945|Caenorhabditis elegans Hypothetical pr... 28 5.9
U13019-10|AAC24442.1| 757|Caenorhabditis elegans Hypothetical p... 28 5.9
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 5.9
AF099917-9|AAC68787.1| 445|Caenorhabditis elegans Hypothetical ... 28 7.8
>AF038611-9|AAB92041.2| 180|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 20 protein.
Length = 180
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/64 (56%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 10 AKGE-LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEI 186
A GE L EY V+GRK+P+E EP P++KM+IF+ + ++AKSRFWYF+ L++ KK GEI
Sbjct: 5 ALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEI 64
Query: 187 VSIK 198
+SIK
Sbjct: 65 LSIK 68
Score = 50.4 bits (115), Expect = 1e-06
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +2
Query: 248 FGIWLRYESRSGVHNMYREYRDLSVGG 328
+G+WL+Y+SR+G HNMYREYRD +V G
Sbjct: 81 YGVWLKYDSRTGHHNMYREYRDTTVAG 107
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 387 PFPITKKSKFPK-KGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFP-----TNPKP 548
PFP PK K + PKP+ F P+P+ +P F KP +FP P P
Sbjct: 36 PFPKPMPKPKPKPKPMPKHKPKPFPKPML-FPKPMPKHKPKPFPKPMLFPKPMPFPKPMP 94
Query: 549 KEIPRXXRWPDP 584
K P+ +P+P
Sbjct: 95 KSKPKSEPFPNP 106
Score = 35.5 bits (78), Expect = 0.039
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 387 PFPITKKSKFPK-KGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFP-----TNPKP 548
PFP FPK K + PKP+ F P+P +P F KP +FP P P
Sbjct: 102 PFP--NPMPFPKPKPMPKHKPKPFPKPML-FPKPMPIPKPMPFPKPMLFPKPMPFPKPMP 158
Query: 549 KEIPRXXRWPDP 584
K P+ +P+P
Sbjct: 159 KSKPKSEPFPNP 170
Score = 35.5 bits (78), Expect = 0.039
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 387 PFPITKKSKFPKKGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFP-TNPKPKEIPR 563
P P K FPK + PKP+ + P+P+ +P F KP +FP P PK +P
Sbjct: 192 PKPFPKPMLFPKP-MPIPKPMPFPKPMPK---PMPKHKPKPFPKPMLFPKPMPIPKPMPF 247
Query: 564 XXRWPDPK 587
P PK
Sbjct: 248 PKPMPKPK 255
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 387 PFPITKKSKFPKKGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFP-TNPKPKEIPR 563
P PI K FPK + PKP P+P+ +P +KPK P PKPK P+
Sbjct: 238 PMPIPKPMPFPKP-----MPKPKPKP-----KPMPKPKPKLKLKPKPMPFPKPKPKLKPK 287
Query: 564 XXRWPDP 584
+P
Sbjct: 288 TKPKKNP 294
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 456 PKPVAQFGSPVPETQPSAFIKPKVFPTNPKPKEIPRXXRWPDP 584
PKP + P+P+ +P F KP +F PKP IP+ +P P
Sbjct: 178 PKPKPK-PKPMPKHKPKPFPKPMLF---PKPMPIPKPMPFPKP 216
Score = 31.1 bits (67), Expect = 0.83
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 387 PFPITKKSKFPKKGLGTSLNSNA-PKPVA-QFGSPVPETQPSAFIKPKVFPTNPKPKEIP 560
P K FPK + S P P+ P+P+ +P F KP +F PKP IP
Sbjct: 80 PMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPKPMPKHKPKPFPKPMLF---PKPMPIP 136
Query: 561 RXXRWPDP 584
+ +P P
Sbjct: 137 KPMPFPKP 144
>Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical
protein AH6.3 protein.
Length = 230
Score = 35.5 bits (78), Expect = 0.039
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 396 ITKKSKFPKKGLGTSLNS--NAPKPVAQFGSPVPETQPSAFIKPKVFPTNPKPKEIPRXX 569
I K K PK T S N PKP Q P P+A K V P +PK K++
Sbjct: 21 ICGKKKKPKPTASTESVSPLNEPKPPPQSAVPQKPAAPAAEEKAPVDPKDPKSKDVDEAK 80
Query: 570 RWPDP 584
+ PDP
Sbjct: 81 K-PDP 84
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 35.1 bits (77), Expect = 0.051
Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 387 PFPITK-KSK-FPKKGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFPT-NPKPKEI 557
P P TK KS+ PK L N PKP +P+PE +P KP P NP+PK
Sbjct: 253 PKPKTKLKSEPKPKPKLKPKPKPN-PKPEP---NPMPELKPKPKHKPNSRPKPNPRPKPK 308
Query: 558 PRXXRWPDPKXR 593
PR P PK R
Sbjct: 309 PRSKPNPKPKPR 320
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 456 PKPVAQFGSPVPETQPSAFIKPKVFPTNPKPKEIPRXXRWPDPK 587
PKP + P PE +P PK P PKPK P+ P+PK
Sbjct: 163 PKPEPK-PKPKPEPKPKPKPDPKPKP-KPKPKPKPKPNPKPEPK 204
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 456 PKPVAQFGSPVPETQPSAFIKPKVFPT---NPKPKEIPRXXRWPDPK 587
PKP + P P+ +P KPK P PKPK P+ P+PK
Sbjct: 175 PKPKPK-PDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPK 220
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 456 PKPVAQFGSPVPETQPSAFIKPKVFPT---NPKPKEIPRXXRWPDPKXR 593
PKP + P P+ +P KPK P PKPK P+ P PK +
Sbjct: 211 PKPKPK-PEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTK 258
>Z75549-1|CAA99917.1| 424|Caenorhabditis elegans Hypothetical
protein T19C4.1 protein.
Length = 424
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 429 LGT-SLNSNAPKPVAQFGSPVPETQPSAFIKPKVFPTNPKPKEI 557
LGT ++S P V G PVP +Q AF+ P + P P+ +
Sbjct: 202 LGTPQIHSRPPSAVPSMGHPVPLSQMGAFV-PPMLEQKPSPRAV 244
>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 417 PKKGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFPTNP 542
P+ L ++ ++P+PV +F P PS+FI P ++P P
Sbjct: 639 PRSALPSAGPFSSPQPVPRFNGP-----PSSFILPSIYPPPP 675
>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 417 PKKGLGTSLNSNAPKPVAQFGSPVPETQPSAFIKPKVFPTNP 542
P+ L ++ ++P+PV +F P PS+FI P ++P P
Sbjct: 639 PRSALPSAGPFSSPQPVPRFNGP-----PSSFILPSIYPPPP 675
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 344 HGREGTPLHSSHGIHGTYCGHQSETRNA 261
HG +P H HG HGT+ GH E +A
Sbjct: 410 HGTHHSPAH--HGEHGTHHGHHGEHHHA 435
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 377 ALCTISNYQEVQVPKKRVGHKFKFQRAQARGPIWFPGSG 493
A+C +SN +Q R+ HKF A+ W+ G G
Sbjct: 374 AVCMLSNTTAIQEAWARLDHKFDLMYAKRAFVHWYVGEG 412
>AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical
protein D1007.13a protein.
Length = 142
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +3
Query: 417 PKKGLGTSLNSNAPKPVAQ---FGSPVPETQPSAFIKPKVFPTN 539
P TS + +P P +GS +P T P + P +PT+
Sbjct: 15 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTS 58
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +3
Query: 417 PKKGLGTSLNSNAPKPVAQ---FGSPVPETQPSAFIKPKVFPTN 539
P TS + +P P +GS +P T P + P +PT+
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTS 163
>Z35663-6|CAD82917.1| 606|Caenorhabditis elegans Hypothetical
protein T04A8.7b protein.
Length = 606
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -1
Query: 407 LLGNWKWCTELLCLSSQNFKTHGREGTPLHSSHGIHGTYCGHQSET--RNATRYQKXFLX 234
LL N +W E F+ G HS HG++ +CG NA +L
Sbjct: 244 LLSNVRWWVEEY--GFDGFRFDGVSSMIYHS-HGMNDDFCGGYPMYFGLNADTDSLVYL- 299
Query: 233 FLXQDFLFXEFPLMDTISPVV 171
L DFL ++P M TI+ V
Sbjct: 300 MLANDFLHKKYPFMITIAEEV 320
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -1
Query: 407 LLGNWKWCTELLCLSSQNFKTHGREGTPLHSSHGIHGTYCGHQSET--RNATRYQKXFLX 234
LL N +W E F+ G HS HG++ +CG NA +L
Sbjct: 319 LLSNVRWWVEEY--GFDGFRFDGVSSMIYHS-HGMNDDFCGGYPMYFGLNADTDSLVYL- 374
Query: 233 FLXQDFLFXEFPLMDTISPVV 171
L DFL ++P M TI+ V
Sbjct: 375 MLANDFLHKKYPFMITIAEEV 395
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 492 ETQPSAFIKPKVFPTNPKPKEIPRXXRWPDPK 587
+++PS+ P P+ P+PK P+ PDPK
Sbjct: 665 KSKPSSSEVPPAEPSAPEPKPAPKPDPKPDPK 696
>Z69791-3|CAA93662.1| 924|Caenorhabditis elegans Hypothetical
protein F39D8.1c protein.
Length = 924
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 456 PKPVAQFGSPVPETQPSAFIKPKVFPTNPKPKEIPRXXRWPDP 584
P PVA +P P TQ + F + + F T+P + P +P P
Sbjct: 571 PVPVAGQNTPAPSTQTNQFTQ-QSFETSPMTTQSPYPVIYPVP 612
>Z69791-2|CAA93661.2| 919|Caenorhabditis elegans Hypothetical
protein F39D8.1b protein.
Length = 919
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 456 PKPVAQFGSPVPETQPSAFIKPKVFPTNPKPKEIPRXXRWPDP 584
P PVA +P P TQ + F + + F T+P + P +P P
Sbjct: 566 PVPVAGQNTPAPSTQTNQFTQ-QSFETSPMTTQSPYPVIYPVP 607
>Z69791-1|CAA93660.1| 945|Caenorhabditis elegans Hypothetical
protein F39D8.1a protein.
Length = 945
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 456 PKPVAQFGSPVPETQPSAFIKPKVFPTNPKPKEIPRXXRWPDP 584
P PVA +P P TQ + F + + F T+P + P +P P
Sbjct: 589 PVPVAGQNTPAPSTQTNQFTQ-QSFETSPMTTQSPYPVIYPVP 630
>U13019-10|AAC24442.1| 757|Caenorhabditis elegans Hypothetical
protein T12A2.2 protein.
Length = 757
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 506 RVYKAKSFPNKPKAKRNSALXPL 574
R+YK K PN+P K A P+
Sbjct: 711 RIYKRKKLPNRPTVKSEEATIPI 733
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 387 PFPITKKSKFPKKGLGTSLNSNAP-KPVAQFGSPVPETQPSAFIKPKVFPTNPKPKEIPR 563
P ++ S P + ++ +AP K A +G P PE PS +P V P P P IP
Sbjct: 414 PASVSVPSPSPASNVPVTITLSAPAKSPATYG-PAPE--PS---RPAVPPVAPAPSVIPT 467
Query: 564 XXRWPDPK 587
+ PK
Sbjct: 468 SSQPSQPK 475
>AF099917-9|AAC68787.1| 445|Caenorhabditis elegans Hypothetical
protein F54D10.9 protein.
Length = 445
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 313 LECRGVPSLPWVLKFWELRHRSSVHHFQ 396
+ CR P P F LRH +S+HH Q
Sbjct: 188 VSCRRAPDPPSKFFFAYLRHGASMHHLQ 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,264,659
Number of Sequences: 27780
Number of extensions: 395696
Number of successful extensions: 1346
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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