Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L03
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 156 2e-39
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 156 2e-39
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 156 2e-39
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 53 3e-08
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 42 5e-05
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 30 0.21
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.5
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy... 26 3.4
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 26 3.4
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 5.9
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 25 7.8
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 7.8
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 7.8
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 25 7.8
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 156 bits (378), Expect = 2e-39
Identities = 75/105 (71%), Positives = 86/105 (81%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RPT + L LPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKS+ MHHE+
Sbjct: 238 RPTDKPLR-LPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHES 296
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
L +PGDNVGFNVKNVSVK++R G V GDSKN+ G A FTAQ
Sbjct: 297 LDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ 341
Score = 67.7 bits (158), Expect = 1e-12
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +2
Query: 470 RVIVLNHPGQISNGYTPVLDCHTVHIACKFAEI 568
+VI+LNHPGQIS GY+PVLDCHT HIACKFAE+
Sbjct: 341 QVIILNHPGQISAGYSPVLDCHTAHIACKFAEL 373
Score = 59.3 bits (137), Expect = 4e-10
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 128
+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+
Sbjct: 191 VSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAI 230
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 156 bits (378), Expect = 2e-39
Identities = 75/105 (71%), Positives = 86/105 (81%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RPT + L LPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKS+ MHHE+
Sbjct: 238 RPTDKPLR-LPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHES 296
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
L +PGDNVGFNVKNVSVK++R G V GDSKN+ G A FTAQ
Sbjct: 297 LDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ 341
Score = 67.7 bits (158), Expect = 1e-12
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +2
Query: 470 RVIVLNHPGQISNGYTPVLDCHTVHIACKFAEI 568
+VI+LNHPGQIS GY+PVLDCHT HIACKFAE+
Sbjct: 341 QVIILNHPGQISAGYSPVLDCHTAHIACKFAEL 373
Score = 59.3 bits (137), Expect = 4e-10
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 128
+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+
Sbjct: 191 VSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAI 230
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 156 bits (378), Expect = 2e-39
Identities = 75/105 (71%), Positives = 86/105 (81%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RPT + L LPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKS+ MHHE+
Sbjct: 238 RPTDKPLR-LPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHES 296
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
L +PGDNVGFNVKNVSVK++R G V GDSKN+ G A FTAQ
Sbjct: 297 LDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ 341
Score = 67.7 bits (158), Expect = 1e-12
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +2
Query: 470 RVIVLNHPGQISNGYTPVLDCHTVHIACKFAEI 568
+VI+LNHPGQIS GY+PVLDCHT HIACKFAE+
Sbjct: 341 QVIILNHPGQISAGYSPVLDCHTAHIACKFAEL 373
Score = 59.3 bits (137), Expect = 4e-10
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 128
+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+
Sbjct: 191 VSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAI 230
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 52.8 bits (121), Expect = 3e-08
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPVGRVETGILKPGT--VVVFAPANITTEVKSLLMHHEALQEAVPG 357
+ ++DV+ I G GTV GRVE G LK G +V +++ T V + M + L AV G
Sbjct: 255 MAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAG 314
Query: 358 DNVGFNVKNVSVKELRCGYV 417
DN G ++++ ++L+ G +
Sbjct: 315 DNCGLLLRSIKREQLKRGMI 334
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 42.3 bits (95), Expect = 5e-05
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMH-HEALQEAVPGD 360
+P+ YK +GT+ G++E G +K + V+ P N T EV ++ E + ++ GD
Sbjct: 471 MPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGD 528
Query: 361 NVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQSHCAKSPRSNIKRIHTCI 525
V V+ +++ GYV +KN + F AQ + P S + ++C+
Sbjct: 529 QVRLRVRG-DDSDVQTGYVLTSTKNPV-HATTRFIAQIAILELP-SILTTGYSCV 580
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 30.3 bits (65), Expect = 0.21
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -1
Query: 401 NSLTDTFLTLKPTLSPGTASCRASWCIRRDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 222
N+ + + T+ + + ASC S + +SVV+ + +T TV + VST TGTV
Sbjct: 57 NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114
Query: 221 PIPPILYTSC 192
+P +C
Sbjct: 115 YVPYTSSVAC 124
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 486 FSTMTLRCEVCSSPAQIVFRISCNVTTAQFLDRYVFDVETNIVTGYS 346
F + C V + +Q F ++T F+D YV +++ IV G+S
Sbjct: 353 FRLLAYNCNVDDACSQFTFP---SLTDTSFMDDYVNELQLEIVPGFS 396
>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 483 STMTLRCEVCSSPAQIVFRISCNVTTAQFLDRYVFDVE 370
+T ++ E CS A I ++CN+ Q + ++ +E
Sbjct: 233 TTKSIHGESCSLTAAIASNLACNIPPLQAIHEALYSIE 270
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 280 FAPANITTEVKSLLMHHEAL 339
+AP +T E K+ L HHE L
Sbjct: 131 WAPEGVTVEKKNCLSHHEVL 150
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +3
Query: 6 RISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALXTPSXXRLLXPHLTSAL 179
R+ G+ G L P TK+ + +G LV + + + K L R HL L
Sbjct: 644 RMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKSFHSTLEVIKISRFSNAHLNMQL 701
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 ANITTEVKSLLMHHEALQEAVPGDNVGFNVKNVSVKELRCGYVAG 423
+NIT E+ + ++ +L E N GF+V+ + C YVAG
Sbjct: 141 SNITKEMGDGMAYYASLAEK----NDGFSVETIEDFNKYCHYVAG 181
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 176 SPVFPCKTYTKSAVLEQYPW 235
S FPCK S L QYP+
Sbjct: 170 SAQFPCKASAHSVPLSQYPY 189
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 314 DLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 204
DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 617 DLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.0 bits (52), Expect = 7.8
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Frame = +1
Query: 331 EAL-QEAVPGD----NVGFNVKNV--SVKE-LRCGYVAGDSKNNLCRGAAD 459
EAL Q +PG+ + F +K + S+K+ ++C VA + KNN C D
Sbjct: 11 EALSQNLLPGNQNHCSFDFQLKEIDDSIKQVIKCALVAAEIKNNECLDMLD 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,720
Number of Sequences: 5004
Number of extensions: 46299
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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