Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L03
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 156 1e-38
03_01_0547 + 4093196-4093657,4094267-4095148 156 1e-38
03_01_0544 + 4082528-4082989,4083585-4084466 156 1e-38
03_01_0543 + 4076981-4077442,4078145-4079026 156 1e-38
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 50 2e-06
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 47 1e-05
02_04_0462 + 23131433-23132836 47 1e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 45 4e-05
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 39 0.002
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 39 0.002
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 30 1.1
10_08_1038 - 22485394-22485960,22486712-22487197 29 2.0
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 28 6.0
01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794 28 6.0
11_04_0242 - 15273774-15274043,15274131-15274235 27 8.0
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 156 bits (379), Expect = 1e-38
Identities = 75/105 (71%), Positives = 90/105 (85%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RP+ + L LPLQDVYKIGGIGTVPVGRVETG+LKPG VV F P+ +TTEVKS+ MHHEA
Sbjct: 228 RPSDKPLR-LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEA 286
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
LQEA+PGDNVGFNVKNV+VK+L+ GYVA +SK++ + AA FT+Q
Sbjct: 287 LQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQ 331
Score = 64.1 bits (149), Expect = 7e-11
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +2
Query: 443 AGELQTSQRRVIVLNHPGQISNGYTPVLDCHTVHIACKFAEI 568
A E + +VI++NHPGQI NGY PVLDCHT HIA KFAE+
Sbjct: 322 AKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEL 363
Score = 35.5 bits (78), Expect = 0.030
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKG 71
ISG+ GDNM+E ST + W+KG
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG 213
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 156 bits (379), Expect = 1e-38
Identities = 75/105 (71%), Positives = 90/105 (85%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RP+ + L LPLQDVYKIGGIGTVPVGRVETG+LKPG VV F P+ +TTEVKS+ MHHEA
Sbjct: 228 RPSDKPLR-LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEA 286
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
LQEA+PGDNVGFNVKNV+VK+L+ GYVA +SK++ + AA FT+Q
Sbjct: 287 LQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQ 331
Score = 64.1 bits (149), Expect = 7e-11
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +2
Query: 443 AGELQTSQRRVIVLNHPGQISNGYTPVLDCHTVHIACKFAEI 568
A E + +VI++NHPGQI NGY PVLDCHT HIA KFAE+
Sbjct: 322 AKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEL 363
Score = 35.5 bits (78), Expect = 0.030
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKG 71
ISG+ GDNM+E ST + W+KG
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG 213
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 156 bits (379), Expect = 1e-38
Identities = 75/105 (71%), Positives = 90/105 (85%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RP+ + L LPLQDVYKIGGIGTVPVGRVETG+LKPG VV F P+ +TTEVKS+ MHHEA
Sbjct: 228 RPSDKPLR-LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEA 286
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
LQEA+PGDNVGFNVKNV+VK+L+ GYVA +SK++ + AA FT+Q
Sbjct: 287 LQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQ 331
Score = 64.1 bits (149), Expect = 7e-11
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +2
Query: 443 AGELQTSQRRVIVLNHPGQISNGYTPVLDCHTVHIACKFAEI 568
A E + +VI++NHPGQI NGY PVLDCHT HIA KFAE+
Sbjct: 322 AKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEL 363
Score = 35.5 bits (78), Expect = 0.030
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKG 71
ISG+ GDNM+E ST + W+KG
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG 213
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 156 bits (379), Expect = 1e-38
Identities = 75/105 (71%), Positives = 90/105 (85%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RP+ + L LPLQDVYKIGGIGTVPVGRVETG+LKPG VV F P+ +TTEVKS+ MHHEA
Sbjct: 228 RPSDKPLR-LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEA 286
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
LQEA+PGDNVGFNVKNV+VK+L+ GYVA +SK++ + AA FT+Q
Sbjct: 287 LQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQ 331
Score = 64.1 bits (149), Expect = 7e-11
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +2
Query: 443 AGELQTSQRRVIVLNHPGQISNGYTPVLDCHTVHIACKFAEI 568
A E + +VI++NHPGQI NGY PVLDCHT HIA KFAE+
Sbjct: 322 AKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEL 363
Score = 35.5 bits (78), Expect = 0.030
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKG 71
ISG+ GDNM+E ST + W+KG
Sbjct: 193 ISGFEGDNMIERSTNLDWYKG 213
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/96 (27%), Positives = 50/96 (52%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEALQEAVPGDN 363
+P+ D YK +GTV +G++E+G + G ++ P +V S+ + ++ A PG+N
Sbjct: 185 MPIIDKYK--DMGTVVMGKIESGTISEGDNMLVMPNKANVKVISVHCDEDRVRSAAPGEN 242
Query: 364 VGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
V + + ++ G+V KN + ++F AQ
Sbjct: 243 VRVKLSGIEEDDITAGFVLSSIKNPV-SAISEFRAQ 277
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPVGRVETGILKPG---TVVVFAPAN-ITTEVKSLLMHHEALQEAV 351
+P++DV+ I G GTV GRVE G +K G ++ P+ + T V + M + L
Sbjct: 270 MPIEDVFSIQGRGTVVTGRVEQGTIKTGEDVEILGLTPSGPLKTTVTGVEMFKKILDHGE 329
Query: 352 PGDNVGFNVKNVSVKELRCGYV 417
GDNVG ++ + +++ G V
Sbjct: 330 AGDNVGLLLRGLKRGDVQRGQV 351
>02_04_0462 + 23131433-23132836
Length = 467
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTE--VKSLLMHHEALQEAVPG 357
L ++DV+ I G GTV GR+E G +K G V T V + M + + +A+ G
Sbjct: 281 LAVEDVFSITGRGTVATGRIERGTVKVGDTVDIVGIRETRNCTVTGVEMFQKTMDDAMAG 340
Query: 358 DNVGFNVKNVSVKELRCGYV 417
DNVG ++ + ++ G V
Sbjct: 341 DNVGLLLRGMQKDDIERGMV 360
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/96 (25%), Positives = 48/96 (50%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEALQEAVPGDN 363
+P+ D YK +GTV +G++E+G ++ G ++ P +V + + ++ A P +N
Sbjct: 230 MPIIDKYK--DMGTVVMGKIESGTIREGDSLLVMPNKTNVKVIGISLDEHKVRRAGPAEN 287
Query: 364 VGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
V + + +++ G+V S N +F AQ
Sbjct: 288 VRVKLSGIEDEDIMAGFVL-SSIGNPVGAVTEFNAQ 322
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPV-GRVETGILKPGTVVVFAPANITTEVKSLLMHHEALQEAVPGD 360
LP+ DV K G G++ETG ++ G+ V+ +P VKS+ + A GD
Sbjct: 482 LPICDVIKSQSTGQFAAFGKLETGAIRIGSKVLISPCGEVAAVKSIERDSNSCDIARAGD 541
Query: 361 NVGFNVKNVSVKELRCG 411
NV +++ + +L G
Sbjct: 542 NVAVSLQGIDGSKLILG 558
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPV-GRVETGILKPGTVVVFAPANITTEVKSLLMHHEALQEAVPGD 360
LP+ DV K G G++ETG ++ G+ V+ +P VKS+ + A GD
Sbjct: 482 LPICDVIKSQSTGQFAAFGKLETGAIRIGSKVLISPCGEVAAVKSIERDSNSCDIARAGD 541
Query: 361 NVGFNVKNVSVKELRCG 411
NV +++ + +L G
Sbjct: 542 NVAVSLQGIDGSKLILG 558
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 169 QALSXLPLQDVYKIGGIGTVPVGRVETGILK-PGTVVVFAPANITTEVKSLLMHHEALQE 345
+AL L + V +IGG+G + +V +LK F P + E+K +L + L E
Sbjct: 194 EALKKLKMVSVVRIGGLGKTTLSKVVFDMLKLQFDCAAFVPVGQSPEIKKVL--KDILVE 251
Query: 346 AVPGDNVGFNVKNVSVKEL 402
+ F+V VS + +
Sbjct: 252 LNKQKYMSFDVTAVSERHM 270
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 421 GDSKNNLCRGAADFTAQSHCAKS--PRSNIKRIHTCIGLPHSPHSL 552
G K L + D ++ S CA + P NI RIH IGL SP L
Sbjct: 81 GQVKTLLQKVHHDASSSSSCAAAAPPSPNILRIHAPIGLARSPAHL 126
>02_05_1276 + 35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 77 QPSLEPWHFGGRLQHVISVPARNPR 3
QP L W GG ++SVPA N R
Sbjct: 1108 QPELTAWLVGGTALQIVSVPALNFR 1132
>01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794
Length = 473
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 407 QRNSLTDTFLTLKPTLSPGTASCRASWCIR 318
+R L D+FL LK L PG+ + S IR
Sbjct: 296 RREKLNDSFLALKAVLPPGSKKDKTSILIR 325
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 560 QICRLCGLCGNPIQVCI 510
QIC +C CG P VCI
Sbjct: 74 QICAVCTCCGGPHGVCI 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,394,335
Number of Sequences: 37544
Number of extensions: 328612
Number of successful extensions: 996
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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