Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L03
(569 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 153 1e-37
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 153 1e-37
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 153 1e-37
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 46 3e-05
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 44 8e-05
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 44 8e-05
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 44 8e-05
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 42 4e-04
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 36 0.020
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 35 0.036
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 34 0.063
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 34 0.063
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 1.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 1.8
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 1.8
U82968-1|AAB40927.1| 281|Caenorhabditis elegans MAD-like-1 homo... 29 2.4
U40947-2|AAC48067.1| 281|Caenorhabditis elegans Mad-like protei... 29 2.4
Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical pr... 29 3.1
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family... 28 4.1
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 28 4.1
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 28 5.4
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 28 5.4
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 5.4
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 28 5.4
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 28 5.4
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 28 5.4
Z82074-1|CAB04928.2| 480|Caenorhabditis elegans Hypothetical pr... 27 7.2
AL132864-6|CAB63395.1| 480|Caenorhabditis elegans Hypothetical ... 27 7.2
AL021487-2|CAA16353.1| 413|Caenorhabditis elegans Hypothetical ... 27 7.2
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81568-9|CAB04599.2| 386|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 27 9.5
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 27 9.5
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 27 9.5
L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain (pr... 27 9.5
L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain (pr... 27 9.5
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 27 9.5
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 153 bits (370), Expect = 1e-37
Identities = 76/105 (72%), Positives = 85/105 (80%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RPT + L LPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKS+ MHHE+
Sbjct: 206 RPTDRPLR-LPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHES 264
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
L EAVPGDNVGFNVKNVSVK++R G V DSK + + A F AQ
Sbjct: 265 LPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 309
Score = 72.9 bits (171), Expect = 1e-13
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +2
Query: 443 AGELQTSQRRVIVLNHPGQISNGYTPVLDCHTVHIACKFAEI 568
A E +T +VI++NHPGQISNGYTPVLDCHT HIACKF E+
Sbjct: 300 AKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNEL 341
Score = 70.1 bits (164), Expect = 1e-12
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 128
ISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EAL
Sbjct: 159 ISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEAL 198
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 153 bits (370), Expect = 1e-37
Identities = 76/105 (72%), Positives = 85/105 (80%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RPT + L LPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKS+ MHHE+
Sbjct: 240 RPTDRPLR-LPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHES 298
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
L EAVPGDNVGFNVKNVSVK++R G V DSK + + A F AQ
Sbjct: 299 LPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 343
Score = 72.9 bits (171), Expect = 1e-13
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +2
Query: 443 AGELQTSQRRVIVLNHPGQISNGYTPVLDCHTVHIACKFAEI 568
A E +T +VI++NHPGQISNGYTPVLDCHT HIACKF E+
Sbjct: 334 AKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNEL 375
Score = 70.1 bits (164), Expect = 1e-12
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 128
ISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EAL
Sbjct: 193 ISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEAL 232
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 153 bits (370), Expect = 1e-37
Identities = 76/105 (72%), Positives = 85/105 (80%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RPT + L LPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKS+ MHHE+
Sbjct: 240 RPTDRPLR-LPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHES 298
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
L EAVPGDNVGFNVKNVSVK++R G V DSK + + A F AQ
Sbjct: 299 LPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 343
Score = 72.9 bits (171), Expect = 1e-13
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +2
Query: 443 AGELQTSQRRVIVLNHPGQISNGYTPVLDCHTVHIACKFAEI 568
A E +T +VI++NHPGQISNGYTPVLDCHT HIACKF E+
Sbjct: 334 AKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNEL 375
Score = 70.1 bits (164), Expect = 1e-12
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 128
ISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EAL
Sbjct: 193 ISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEAL 232
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/107 (26%), Positives = 52/107 (48%)
Frame = +1
Query: 205 KIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEALQEAVPGDNVGFNVKN 384
K +GTV +G++E+G ++ G +V P +V + + V GDN+ F +K
Sbjct: 347 KYSEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKG 406
Query: 385 VSVKELRCGYVAGDSKNNLCRGAADFTAQSHCAKSPRSNIKRIHTCI 525
+ EL+ G++ S ++L + F A+ RS I ++C+
Sbjct: 407 IEENELQGGFII-CSPDSLAKTGRVFDAEV-LVLEHRSIIASGYSCV 451
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 193 QDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSLLMHHEALQEAV----PG 357
+ VY I G GTV G++E GILK G + + T VKS++ E+ ++ V PG
Sbjct: 257 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 316
Query: 358 DNVGFNVKNVSVKELRCGYV 417
D +G ++ + K++R G V
Sbjct: 317 DQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 193 QDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSLLMHHEALQEAV----PG 357
+ VY I G GTV G++E GILK G + + T VKS++ E+ ++ V PG
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 317
Query: 358 DNVGFNVKNVSVKELRCGYV 417
D +G ++ + K++R G V
Sbjct: 318 DQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 193 QDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSLLMHHEALQEAV----PG 357
+ VY I G GTV G++E GILK G + + T VKS++ E+ ++ V PG
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 317
Query: 358 DNVGFNVKNVSVKELRCGYV 417
D +G ++ + K++R G V
Sbjct: 318 DQLGVLLRGLGPKDVRRGCV 337
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 22 TEITCWSRPPKCHGSRDGWLSVKKERL---KVNALLRPSXRH 138
TE TC P CHGSRDG L+ +KE L + LL PS H
Sbjct: 180 TETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHH 221
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 190 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSLLMHHEALQEAVPG 357
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCG 436
Query: 358 DNVGFNVKNVSVKELRCGYVAGDSK 432
+ F +K + K++R G V D K
Sbjct: 437 QSASFALKKIPKKDVRKGMVLVDPK 461
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 35.1 bits (77), Expect = 0.036
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 190 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSLLMHHEALQEAVPG 357
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKCG 437
Query: 358 DNVGFNVKNVSVKELRCGYVAGDSK 432
+ F +K + K++R G V D K
Sbjct: 438 QSASFALKKIPKKDVRQGMVLVDPK 462
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 34.3 bits (75), Expect = 0.063
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANITTEVKSLLMHHEALQEAVPG 357
+P+ I G GTV VG +E G+LK G V + T + + ++++E G
Sbjct: 242 MPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAG 301
Query: 358 DNVGFNVKNVSVKELRCGYVAG 423
D+ G + V ++ G AG
Sbjct: 302 DHCGVLCRGVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 34.3 bits (75), Expect = 0.063
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANITTEVKSLLMHHEALQEAVPG 357
+P+ I G GTV VG +E G+LK G V + T + + ++++E G
Sbjct: 242 MPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAG 301
Query: 358 DNVGFNVKNVSVKELRCGYVAG 423
D+ G + V ++ G AG
Sbjct: 302 DHCGVLCRGVKGDTVKRGMWAG 323
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEALQEAVPGDN 363
+ + + I G GTV G V G+L+ T + F N VK+L + + + G
Sbjct: 204 IAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGAR 263
Query: 364 VGFNV 378
F V
Sbjct: 264 AAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 184 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEALQEAVPGDN 363
+ + + I G GTV G V G+L+ T + F N VK+L + + + G
Sbjct: 163 IAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGAR 222
Query: 364 VGFNV 378
F V
Sbjct: 223 AAFLV 227
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 259 KPGTVVVFAPANITTEVKSLLMHHEALQEAVPGDNVGFNVKNVSVKELRC 408
KPGT+ F P ITTE K H L+ + GD +++ + +++ C
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS-AFRDVLC 404
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 353 GTASCRASWCIRRDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 204
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 353 GTASCRASWCIRRDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 204
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
>U82968-1|AAB40927.1| 281|Caenorhabditis elegans MAD-like-1 homolog
protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 370 FNVKNVS-VKELRCGYVAGDSKNNLCRGAADFTAQSHCAKSP-RSNIKRIHT 519
F++ N S ++ L CG + D K + C A ++Q +C+ P R + K T
Sbjct: 47 FDLSNESELRSLFCGKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRT 98
>U40947-2|AAC48067.1| 281|Caenorhabditis elegans Mad-like protein 1
protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 370 FNVKNVS-VKELRCGYVAGDSKNNLCRGAADFTAQSHCAKSP-RSNIKRIHT 519
F++ N S ++ L CG + D K + C A ++Q +C+ P R + K T
Sbjct: 47 FDLSNESELRSLFCGKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRT 98
>Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical
protein K01C8.3a protein.
Length = 650
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 85 RSTNHPLNHGILVDGSNMLSPCQPEILV 2
R T PL+ + D LSPC P+ILV
Sbjct: 622 RYTPQPLDLALAPDSDPELSPCSPQILV 649
>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
protein 5, isoformb protein.
Length = 1306
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 432 KQFVQGSCRLHSAESLC*ITQVKYQTDTHLYWIATQST 545
+QF GSC L + E + T ++ Q T +YW A T
Sbjct: 1029 RQFT-GSCNLLTIEKMIEHTAIENQIRTDIYWYAVNPT 1065
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 432 KQFVQGSCRLHSAESLC*ITQVKYQTDTHLYWIATQST 545
+QF GSC L + E + T ++ Q T +YW A T
Sbjct: 1173 RQFT-GSCNLLTIEKMIEHTAIENQIRTDIYWYAVNPT 1209
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 310 KSLLMHHEALQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQSHCAKS 489
+ L+ H E L++A GD NVK V++ + + K + + DF+A S +
Sbjct: 378 RCLMSHVECLKKA--GD--ARNVKPVAIPRMAADSILQSLKESEAQEYPDFSAASTTSSG 433
Query: 490 PRSNIK 507
P S +K
Sbjct: 434 PASTLK 439
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 425 SPAT*PQRNSLTDTFLTLKPTLSPGTASCRAS 330
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 425 SPAT*PQRNSLTDTFLTLKPTLSPGTASCRAS 330
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 255 PKAWYCCRFCP 287
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 425 SPAT*PQRNSLTDTFLTLKPTLSPGTASCRAS 330
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 425 SPAT*PQRNSLTDTFLTLKPTLSPGTASCRAS 330
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 310 KSLLMHHEALQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQSHCAKS 489
+ L+ H E L++A GD NVK V++ + + K + + DF+A S +
Sbjct: 378 RCLMSHVECLKKA--GD--ARNVKPVAIPRMAADSILQSLKESEAQEYPDFSAASTTSSG 433
Query: 490 PRSNIK 507
P S +K
Sbjct: 434 PASTLK 439
>Z82074-1|CAB04928.2| 480|Caenorhabditis elegans Hypothetical
protein W06H12.1 protein.
Length = 480
Score = 27.5 bits (58), Expect = 7.2
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +1
Query: 238 RVETGILKPGTVVVF--APANITTEVKSLLMHHEALQEAVPGDNVGFNVKNVSVKELRCG 411
RV G+ GT V P+N TT + +L+ AL+ + + +V N +K CG
Sbjct: 23 RVMVGMKSNGTDYVQEQTPSNSTTVICTLVKITGALERCIESNKAMNDVLNGKMKCTTCG 82
Query: 412 YVAGDSKNNLCRGAADFTAQSHCAKSPRSNIKRIHTCIGLPHSPHSLQ 555
+ ++ C +A T + +S +R + G H L+
Sbjct: 83 ATSVGLLSD-CHDSATSTTTTVSHRSSEEPPRRKPSAAGGDHDDEELE 129
>AL132864-6|CAB63395.1| 480|Caenorhabditis elegans Hypothetical
protein W06H12.1 protein.
Length = 480
Score = 27.5 bits (58), Expect = 7.2
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +1
Query: 238 RVETGILKPGTVVVF--APANITTEVKSLLMHHEALQEAVPGDNVGFNVKNVSVKELRCG 411
RV G+ GT V P+N TT + +L+ AL+ + + +V N +K CG
Sbjct: 23 RVMVGMKSNGTDYVQEQTPSNSTTVICTLVKITGALERCIESNKAMNDVLNGKMKCTTCG 82
Query: 412 YVAGDSKNNLCRGAADFTAQSHCAKSPRSNIKRIHTCIGLPHSPHSLQ 555
+ ++ C +A T + +S +R + G H L+
Sbjct: 83 ATSVGLLSD-CHDSATSTTTTVSHRSSEEPPRRKPSAAGGDHDDEELE 129
>AL021487-2|CAA16353.1| 413|Caenorhabditis elegans Hypothetical
protein Y45F10B.2 protein.
Length = 413
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 465 CEVCSSPAQIVFRISCNVTTAQFLDRY--VFDVETNIVTGY 349
C++C SP R++ + T Q Y ++DVE N V Y
Sbjct: 87 CDLCESPKTSELRVAYDAATFQTTYSYSIIWDVEMNDVEHY 127
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -1
Query: 401 NSLTDTFLTLKPTLSPGTASCRASWCIRRDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 222
++ T T T T +PGT + + T+ GA TT PG V+ PT +
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTA---AQTTTTTPSTPGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 221 PIPPILYTSCRG 186
+ T+ +G
Sbjct: 2074 STTQPIITTTKG 2085
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
protein F39B2.4b protein.
Length = 1589
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 319 LMHHEALQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQSH-CAKSPR 495
++HH A + + VG N + V + LR + G NLC T+ C++ +
Sbjct: 86 MVHHVAEKNSPDRVFVGTNYERVVDQLLRYAHQKGAISTNLCAEGLIMTSDFRLCSRICQ 145
Query: 496 SNIKRIHTCI 525
K I+ CI
Sbjct: 146 EKWKFINDCI 155
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
protein F39B2.4a protein.
Length = 1587
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 319 LMHHEALQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQSH-CAKSPR 495
++HH A + + VG N + V + LR + G NLC T+ C++ +
Sbjct: 86 MVHHVAEKNSPDRVFVGTNYERVVDQLLRYAHQKGAISTNLCAEGLIMTSDFRLCSRICQ 145
Query: 496 SNIKRIHTCI 525
K I+ CI
Sbjct: 146 EKWKFINDCI 155
>Z81568-9|CAB04599.2| 386|Caenorhabditis elegans Hypothetical
protein K08E3.7 protein.
Length = 386
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 465 CEVCSSPAQIVFRISCNVTTAQFLDR 388
C VC +++F + CN T QF R
Sbjct: 191 CCVCDGKEKVIFDLGCNHITCQFCFR 216
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = -1
Query: 389 DTFLTLKPTLSPGTASCRASWCIRRDLTSVVMLAGAKTTTVPGFR--IPVSTLPTGTVPI 216
+TF + S R S + D T V + +TVP + VST PT +
Sbjct: 36 NTFTQSSAVSESQSTSERTSRSVSPDSTPVRVTTSTLLSTVPTSQDISGVSTAPTTKATL 95
Query: 215 PPILY 201
PPI Y
Sbjct: 96 PPITY 100
>Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical
protein M163.2 protein.
Length = 500
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 58 HGSRDGWLSVKKERLKVNALLRPSXRHPXSACXRPT*QALSXLPL 192
HGS G L V++ + A L P+ + P A ALS +P+
Sbjct: 113 HGSSGGLLQVQQSQYFGPAELNPNLKRPHDATTSTEFGALSVVPI 157
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -1
Query: 401 NSLTDTFLTLKPTLSPGTASCRASWCIRRDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 222
++ T T T T +PGT + + T+ GA TT PG V+ PT +
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTA---AQTTTTTPSTPGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 221 PIPPILYTSCRG 186
+ T+ +G
Sbjct: 2074 STTQPIITTTKG 2085
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 447 GSCRLHSAESLC*ITQVKYQTDTHLYWI 530
GS R SLC +T Y+ +LYWI
Sbjct: 313 GSSRFTELLSLCTVTNKYYEDVQYLYWI 340
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 319 LMHHEALQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQSH-CAKSPR 495
++HH A + + VG N + V + LR + G NLC T+ C++ +
Sbjct: 86 MVHHVAEKNSPDRVFVGTNYERVVDQLLRYAHQKGAISTNLCAEGLIMTSDFRLCSRICQ 145
Query: 496 SNIKRIHTCI 525
K I+ CI
Sbjct: 146 EKWKFINDCI 155
>L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform a
protein.
Length = 456
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 440 CAGELQTSQRRVIVLNHPGQISNG 511
C GE QT QRR + N P +NG
Sbjct: 248 CEGEGQTVQRRQVSFNVPAGTNNG 271
>L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform b
protein.
Length = 446
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 440 CAGELQTSQRRVIVLNHPGQISNG 511
C GE QT QRR + N P +NG
Sbjct: 248 CEGEGQTVQRRQVSFNVPAGTNNG 271
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -1
Query: 401 NSLTDTFLTLKPTLSPGTASCRASWCIRRDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 222
++ T T T T +PGT + + T+ GA TT PG V+ PT +
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTA---AQTTTTTPSTPGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 221 PIPPILYTSCRG 186
+ T+ +G
Sbjct: 2074 STTQPIITTTKG 2085
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,659,440
Number of Sequences: 27780
Number of extensions: 275096
Number of successful extensions: 867
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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