Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L03
(569 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 182 2e-48
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 175 3e-46
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 165 3e-43
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 95 4e-22
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 86 2e-19
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 24 1.2
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 3.7
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 8.6
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 8.6
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 182 bits (443), Expect = 2e-48
Identities = 96/133 (72%), Positives = 102/133 (76%)
Frame = +1
Query: 73 GWLSVKKERLKVNALLRPSXRHPXSACXRPT*QALSXLPLQDVYKIGGIGTVPVGRVETG 252
GW +KE KV RPT +AL LPLQDVYKIGGIGTVPVGRVETG
Sbjct: 213 GWTVERKEG-KVEGKCLIEALDAILPPTRPTDKALR-LPLQDVYKIGGIGTVPVGRVETG 270
Query: 253 ILKPGTVVVFAPANITTEVKSLLMHHEALQEAVPGDNVGFNVKNVSVKELRCGYVAGDSK 432
+LKPG VV FAPA +TTEVKS+ MHHEALQEAVPGDNVGFNVKNVSVKELR GYVAGDSK
Sbjct: 271 VLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 330
Query: 433 NNLCRGAADFTAQ 471
NN +GAADFTAQ
Sbjct: 331 NNPPKGAADFTAQ 343
Score = 86.2 bits (204), Expect = 2e-19
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 128
ISGWHGDNMLE S+KMPWFKGW VERKEGK EGKCLIEAL
Sbjct: 193 ISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEAL 232
Score = 73.7 bits (173), Expect = 1e-15
Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 8/65 (12%)
Frame = +2
Query: 398 NCAVVTLQEIRKTICAGELQTSQRR--------VIVLNHPGQISNGYTPVLDCHTVHIAC 553
N V+++E+R+ AG+ + + + VIVLNHPGQISNGYTPVLDCHT HIAC
Sbjct: 311 NVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 370
Query: 554 KFAEI 568
KFA+I
Sbjct: 371 KFADI 375
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 175 bits (425), Expect = 3e-46
Identities = 87/105 (82%), Positives = 93/105 (88%)
Frame = +1
Query: 157 RPT*QALSXLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSLLMHHEA 336
RPT +AL LPLQDVYKIGGIGTVPVGRVETGILKPG +V FAPA +TTEVKS+ MHHEA
Sbjct: 240 RPTDKALR-LPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEA 298
Query: 337 LQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
L EA+PGDNVGFNVKN+SVKELR GYVAGDSKN RGAADFTAQ
Sbjct: 299 LTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQ 343
Score = 78.2 bits (184), Expect = 5e-17
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 128
ISGWHGDNMLEPS K PW+KGW VERK+G A+GK LIEAL
Sbjct: 193 ISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEAL 232
Score = 75.4 bits (177), Expect = 4e-16
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 8/65 (12%)
Frame = +2
Query: 398 NCAVVTLQEIRKTICAGELQTSQRR--------VIVLNHPGQISNGYTPVLDCHTVHIAC 553
N ++++E+R+ AG+ + R VIVLNHPGQISNGYTPVLDCHT HIAC
Sbjct: 311 NVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 370
Query: 554 KFAEI 568
KFAEI
Sbjct: 371 KFAEI 375
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 165 bits (401), Expect = 3e-43
Identities = 87/121 (71%), Positives = 92/121 (76%)
Frame = +1
Query: 73 GWLSVKKERLKVNALLRPSXRHPXSACXRPT*QALSXLPLQDVYKIGGIGTVPVGRVETG 252
GW +KE KV RPT +AL LPLQDVYKIGGIGTVPVGRVETG
Sbjct: 156 GWTVERKEG-KVEGKCLIEALDAILPPTRPTDKALR-LPLQDVYKIGGIGTVPVGRVETG 213
Query: 253 ILKPGTVVVFAPANITTEVKSLLMHHEALQEAVPGDNVGFNVKNVSVKELRCGYVAGDSK 432
+LKPG VV FAPA +TTEVKS+ MHHEALQEAVPGDNVGFNVKNVSVKELR GYVAGDSK
Sbjct: 214 VLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 273
Query: 433 N 435
N
Sbjct: 274 N 274
Score = 86.2 bits (204), Expect = 2e-19
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 128
ISGWHGDNMLE S+KMPWFKGW VERKEGK EGKCLIEAL
Sbjct: 136 ISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEAL 175
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 95.1 bits (226), Expect = 4e-22
Identities = 45/54 (83%), Positives = 48/54 (88%)
Frame = +1
Query: 310 KSLLMHHEALQEAVPGDNVGFNVKNVSVKELRCGYVAGDSKNNLCRGAADFTAQ 471
KS+ MHHEAL EA+PGDNVGFNVKN+SVKELR GYVAGDSKN RGAADFTAQ
Sbjct: 1 KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQ 54
Score = 75.4 bits (177), Expect = 4e-16
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 8/65 (12%)
Frame = +2
Query: 398 NCAVVTLQEIRKTICAGELQTSQRR--------VIVLNHPGQISNGYTPVLDCHTVHIAC 553
N ++++E+R+ AG+ + R VIVLNHPGQISNGYTPVLDCHT HIAC
Sbjct: 22 NVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 81
Query: 554 KFAEI 568
KFAEI
Sbjct: 82 KFAEI 86
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 86.2 bits (204), Expect = 2e-19
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = +3
Query: 9 ISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEAL 128
ISGWHGDNMLE S+KMPWFKGW VERKEGK EGKCLIEAL
Sbjct: 120 ISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEAL 159
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 23.8 bits (49), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 253 ILKPGTVVVFAPANITTEVKSLLMHHEALQEAVPGDNVGFNVK-NVSVKEL 402
+L GTV NIT +++LLM++E Q G VK N+ ++ +
Sbjct: 23 MLTRGTVNDIVSRNITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSM 73
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 22.2 bits (45), Expect = 3.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +3
Query: 396 GIALWLRCRRFEKQFVQGSC 455
G+ +WL C F +QF C
Sbjct: 412 GMWMWLSCSSFFQQFFHCYC 431
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 232 RVLFQYRRFCIRLAGEDXRALVK 164
R+L FC+ L ED LV+
Sbjct: 10 RILLISAVFCVGLCSEDEERLVR 32
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 490 PRSNIKRIHTCIGLPHSP 543
P S +R HT G+P P
Sbjct: 1067 PMSEERRQHTAEGVPEQP 1084
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,498
Number of Sequences: 438
Number of extensions: 3150
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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