Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L02
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 31 0.065
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 29 0.46
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 27 1.4
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.9
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 5.7
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 25 7.5
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 24 9.9
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 24 9.9
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 24 9.9
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 31.5 bits (68), Expect = 0.065
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Frame = +2
Query: 98 TRKSFATHI-----LYFLTELSPLSMT--SFYVKKHAKSDTIKRDTRXXXXXXXXXXXWK 256
T+ SF+THI L+ E+SP+ T ++ K + T+K D K
Sbjct: 744 TKDSFSTHISVSSLLHSDNEISPIDSTRKDYFTSKDSNLQTLKEDASST----------K 793
Query: 257 VIQDSGLVDIDNLEEANNVNEKFGNIEQ 340
+DSG D D L N+V++ EQ
Sbjct: 794 QAKDSGTNDFDKLISGNDVSKNNSGEEQ 821
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 28.7 bits (61), Expect = 0.46
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 8 VKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHA 187
+K+ YD +GN + +EIP +K + R + + F E++ + + S K +A
Sbjct: 143 LKSKTLAYDGRGNYVVHQPSEIPTAIKALGDRPLYVEKFVPFSMEIAVMVVRSLDGKVYA 202
Query: 188 --KSDTIKRD 211
++TI++D
Sbjct: 203 YPTTETIQKD 212
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 116 THILYFLTELSPLSMTSFYVKKHAKSDTI 202
+ ILYFL LSP+S +S V H ++I
Sbjct: 94 SQILYFLYLLSPISQSSRDVSSHLLDESI 122
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3
Query: 448 YVIVFRPFPASSTFFISNEFLF--VYRINLIFVYIVNLLFN 332
Y + FRP SS I L+ YR N I++ ++ + N
Sbjct: 154 YTLYFRPMVVSSFAHIFGHLLYCMAYRANWIYLILIGRMLN 194
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 25.0 bits (52), Expect = 5.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 14 ADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHI 124
ADY DP +L N P F+ H+ R+S HI
Sbjct: 557 ADYRKEDPSSFRLLPNFTLYPQFIFHL--RRSPFLHI 591
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 281 DIDNLEEANNVN---EKFGNIEQKVNDINKYQVNTINK 385
DID + ++N + E FGN K+N +N + V+T+++
Sbjct: 34 DIDWNQASSNYSARQENFGNNSSKINSVNDH-VSTLSR 70
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 278 VDIDNLEEANNVNEKFGNIEQKVNDINKYQVNTI 379
V D ++ + EK EQ + D +YQ NTI
Sbjct: 421 VGCDKMDPIRGIREKLLAFEQFLYDNPEYQKNTI 454
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +2
Query: 281 DIDNLEEANNVNEKFGNIEQKVNDINKYQVNTINKEKFVTDXXXXXXXXXXKYDDIFS 454
D ++L+E + V + IEQ +D++ ++ I E + D + ++FS
Sbjct: 120 DSEDLDEESVVKDTEEIIEQAQHDVSLRNLSGIEDENIIDDGETAINEQKKREANVFS 177
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 275 LVDIDNLEEANNVNEKFGNIEQKVNDINKYQVNTINK 385
L D+ + + +NV F N+EQ ++ N Y++ NK
Sbjct: 88 LYDVTDKKSFDNVRTWFSNVEQHASE-NVYKILIGNK 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,496
Number of Sequences: 5004
Number of extensions: 29423
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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