Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L02
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187...    30   1.1  
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    27   5.6  
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864...    27   5.6  
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416...    27   5.6  
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405...    27   7.4  
06_03_1471 + 30374988-30375959                                         27   9.8  

>07_01_0251 +
           1874148-1874311,1874367-1874429,1874484-1874709,
           1874830-1875081,1875158-1875267,1875720-1875815,
           1875898-1875985,1876246-1876475,1876745-1876929,
           1877136-1877335,1877592-1877924,1878058-1878159,
           1878869-1879166,1879626-1879774,1879859-1880143,
           1880531-1880728
          Length = 992

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 457 FRKYVIVFRPFPASSTFFISNEFLFVYRINLIFVYIVNLLFNI 329
           F  +V+VF  FP   +F I  E  +  R+N  F  + N++F I
Sbjct: 671 FVYFVLVFSMFPQCDSFRILREDSWADRVNSFFTAMWNVVFEI 713


>04_04_0468 -
           25447774-25447945,25449016-25449130,25449541-25449877,
           25450299-25450628,25451090-25451362,25451471-25451929,
           25452307-25452516,25452617-25452828,25453304-25453404,
           25453584-25454008,25454167-25454360,25454436-25454701,
           25454809-25455015,25455121-25455281,25455741-25455933,
           25456158-25456251,25457238-25457373,25458074-25458202,
           25458315-25458449,25458549-25458613,25459875-25459950,
           25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 311 HYSLLPNYLCLLNQNLESLSNIHWYY 234
           H  L+P  L      L+SLSN+H+YY
Sbjct: 624 HEMLIPAVLKPSGLKLDSLSNLHFYY 649


>02_05_0161 +
           26384079-26384086,26386173-26386226,26386376-26386448,
           26386775-26386822,26386906-26386953,26387990-26388061,
           26388156-26388311,26388428-26388531,26388628-26388724
          Length = 219

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 317 EKFGNIEQKVNDINKYQVNTINK 385
           E F N++Q +N+I++Y  + +NK
Sbjct: 110 ESFNNVKQWLNEIDRYASDNVNK 132


>01_01_0565 -
           4159946-4160042,4160140-4160243,4160378-4160533,
           4160629-4160700,4161796-4161843,4161923-4161970,
           4162295-4162367,4163188-4163201
          Length = 203

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 317 EKFGNIEQKVNDINKYQVNTINK 385
           E F N++Q +N+I++Y  + +NK
Sbjct: 94  ESFNNVKQWLNEIDRYASDNVNK 116


>01_05_0340 -
           21139885-21139978,21140169-21140272,21140379-21140534,
           21140622-21140693,21140782-21140829,21140923-21140970,
           21141807-21141879,21142333-21142346
          Length = 202

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 317 EKFGNIEQKVNDINKYQVNTINK 385
           E F N++Q +N+I++Y    +NK
Sbjct: 94  ESFNNVKQWLNEIDRYASENVNK 116


>06_03_1471 + 30374988-30375959
          Length = 323

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 29  YDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSP 151
           Y P G  + SNL   PD +    T  SF T   +++T  SP
Sbjct: 204 YGPAGQAIGSNLLSNPDLVASDAT-VSFKTAFWFWMTPQSP 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,977,596
Number of Sequences: 37544
Number of extensions: 136746
Number of successful extensions: 285
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)