Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L02
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    29   1.6  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    28   3.8  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z81534-3|CAB04347.3|  328|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AL110485-30|CAI79250.1|  287|Caenorhabditis elegans Hypothetical...    27   6.6  
AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    27   8.8  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    27   8.8  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 38  KGNKLPSNLAEIPDFLKHIPTRKSFATHILY 130
           K NK PS +   P   KH+P  K     I+Y
Sbjct: 758 KPNKSPSTMFRYPQCTKHVPATKVVIVRIIY 788


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -1

Query: 390 FSLFIVLT*YLF-ISLTFCSILPNFSLTLFA 301
           F+LF+V+  Y+F IS    ++LPN S T+++
Sbjct: 77  FTLFVVVAKYIFFISFQVFAVLPNMSETIYS 107


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 23  EVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHAKS 193
           E Y   G +LP  +  + +  +  P       + L   T L P S+T+F++ ++ K+
Sbjct: 760 EEYRKDGKELPKQMKLLHESYERCPMLGDDVRYNLALKTFLPPKSITNFFINRNRKT 816


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 23  EVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHAKS 193
           E Y   G +LP  +  + +  +  P       + L   T L P S+T+F++ ++ K+
Sbjct: 758 EEYRKDGKELPKQMKLLHESYERCPMLGDDVRYNLALKTFLPPKSITNFFINRNRKT 814


>Z81534-3|CAB04347.3|  328|Caenorhabditis elegans Hypothetical
           protein F37H8.4 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 44  NKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTS 166
           ++L SNL   PD  K   +++++   + +F T  +PL++TS
Sbjct: 2   SELVSNLKTRPDISKPQWSQRTYYGRVRHFFTLTNPLTLTS 42


>Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical
           protein M05D6.6 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 47  KLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHAKSDTIKRD 211
           KL  + A+IP ++ H    +      + F+   S    ++FY+ + A +  I RD
Sbjct: 97  KLYPSAADIPPYVHHGTMNRMHDRMRVVFIVTASLFFFSTFYIAERAMAQKIARD 151


>AL110485-30|CAI79250.1|  287|Caenorhabditis elegans Hypothetical
           protein Y46G5A.39 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 38  KGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHAKSDTIK 205
           KG  +   L  I DFL+H+   K+    +LY+L E    S+     +K  K + +K
Sbjct: 94  KGRDVNRVLETILDFLEHLKINKNLDITVLYYL-EGDIQSIVELIARKTIKVNHLK 148


>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 83  LKHIPTRKSFATHI---LYFLTELSPLSMTSFYVKKHA 187
           LKH  TRKS    +   L++L  ++PL +T F    HA
Sbjct: 118 LKHFETRKSNRASLKFSLHYLIPMTPLILTYFAPINHA 155


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 83  LKHIPTRKSFATHI---LYFLTELSPLSMTSFYVKKHA 187
           LKH  TRKS    +   L++L  ++PL +T F    HA
Sbjct: 118 LKHFETRKSNRASLKFSLHYLIPMTPLILTYFAPINHA 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,682,353
Number of Sequences: 27780
Number of extensions: 152867
Number of successful extensions: 454
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)