Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L01
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.1  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    27   2.1  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   2.7  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   4.8  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   4.8  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    25   6.3  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    25   6.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   6.3  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   6.3  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   8.4  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   8.4  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   8.4  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 56  FFNNCMRFFKASSLS 12
           F NNC++F+KA SL+
Sbjct: 632 FLNNCLKFYKAFSLT 646


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 490  YCGPDVRSDQ*SRTLRSQIPTLRIXXXXXXXXSVWAH-HQQV*WQL-QAIEQ 341
            Y G  V+ D     +  +IPTL+I         +W   H+ V W L Q ++Q
Sbjct: 1572 YVGFQVQLDLTGIMMHGKIPTLKISLIQIFRSHLWQKIHESVVWDLCQVLDQ 1623


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 471 DQISDRELYGVRFRRYVFLAFYRYADRC 388
           D     E Y +   RY FLA Y Y  +C
Sbjct: 173 DTFRKEECYALSLVRYSFLASYHYMKKC 200


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 176 SHFISKVACQSLPCYSPRLLEHTKSRRNPRHLVQINDTSSQSTFCRVVQ*ILRRGLLYCL 355
           S  I K   +SLP Y P     T      R L+  ++T+ +  +C+ +  +L   L+YC 
Sbjct: 258 SEEIEKDLTRSLPDY-PAYQSPTGINTLRRILLFYSETNKEVGYCQAMNIVLAALLVYCT 316

Query: 356 KLPSHLL 376
           +  ++ L
Sbjct: 317 EEQAYFL 323


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 388 TPISIAIKGKKYVTSESDSVEFSITDLIGRPVRSM 492
           TPIS  I+G  +V +E +++  S+ D +    RS+
Sbjct: 660 TPISAFIRGPSFVLAEWNALLASVIDYVDSGWRSL 694


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 449 STESDSDVTYFLPFIAMLIGVGTSSA 372
           S ++D DV Y   F   L+G GTS+A
Sbjct: 695 SHDNDLDVAYNAIFAMGLVGAGTSNA 720


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 179 HFISKVACQSLPCYSPRLLEHT 244
           +FI+ +AC SL C+S  L+ ++
Sbjct: 418 NFITSIACLSLLCFSASLMANS 439


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 398 LIGVGTSSASVMAASSNRAAPFAEFTERRDRRYSANLYR*SALNG 264
           +  +G  S   +A ++     +  ++ER+   +S+ LY  SAL+G
Sbjct: 48  IYSMGKKSFPFLAIANALVQGYLSYSERKRSIFSSKLYAISALSG 92


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 31  KNLIQLLKKDDSPVNYGYVFALCEHMGCGTWTVTHAEGVLLAADETDSKSLHFEG 195
           +++I L+K  D  +  G    +  H G G  T+  A   ++  +E  + SLH++G
Sbjct: 86  RDIIPLVKGFDGYLQPGSSLLVLGHEGSGGSTLLKALCGIVEENERLNGSLHYDG 140


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 47  C*RRMILLLTMGTFLPYANTWDAARGLLLMRRVCCWPL 160
           C  R+I+ +T+G  LP   +  ++ G +  R + C PL
Sbjct: 155 CFSRVIVNVTLGAPLPQQKSLGSSIGHMATRCISCRPL 192


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +1

Query: 25  ALKNLIQLLKKDDSPVNYGYVFALCEHMGCGTWTVTHAEGV 147
           AL  LI     D  P+  G  F +      G+W     EG+
Sbjct: 647 ALDALINAKYPDRKPIEKGIKFLMASQKSDGSWQQKSMEGI 687


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   ARGFDKEDALKNLIQLLKKDDSPVNYGYVF 90
           AR  D  D LK++ +L K  +   +YG+VF
Sbjct: 78  ARNEDLNDLLKSIRKLEKTFNHKYHYGWVF 107


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 176 SHFISKVACQSLPCYSPRLLEHTKSRRNPRHLVQIND-TSSQSTFCRVVQ*ILRRGLLYC 352
           SH +S++  +S  CY PR+  H         L +++D         RV + I + G +  
Sbjct: 47  SHEMSQILKKSGLCYDPRMRFHAT-------LSEVDDHPEDPRRVLRVFEAIKKAGYVSN 99

Query: 353 LKLPSHLLMMCPHRSA 400
           +  PS + +  P R A
Sbjct: 100 VPSPSDVFLRIPAREA 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,599
Number of Sequences: 5004
Number of extensions: 38320
Number of successful extensions: 128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)