Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L01
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938     37   0.010
01_01_1137 + 9017211-9018584                                           31   0.51 
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244...    28   3.6  
09_04_0244 - 15984862-15984978,15985054-15985119,15985701-159857...    28   4.8  
01_07_0030 + 40601063-40601182,40601684-40602116,40602217-406023...    27   6.3  
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    27   6.3  
10_08_0735 - 20200229-20200693,20200813-20201823,20202172-202022...    27   8.4  

>02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938
          Length = 463

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 58  DDSPVNYGYVFALCEHMGCGTWTVTHAEGV--LLAADETDSKSLHFEGG 198
           D SP  YG+VF  C+H+  GT TVTH   +    AA    +K    EGG
Sbjct: 254 DVSPDFYGWVFPKCDHVAVGTGTVTHKPDIKKFQAATRLRAKD-RIEGG 301


>01_01_1137 + 9017211-9018584
          Length = 457

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 58  DDSPVNYGYVFALCEHMGCGTWTV 129
           D SP  YG+VF  C+H+  GT TV
Sbjct: 235 DVSPDFYGWVFPKCDHVAVGTGTV 258


>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
            31825391-31825549,31825965-31826093,31826257-31826460,
            31827200-31827412,31827547-31830912,31830999-31831150,
            31831912-31832407,31832646-31833456,31833537-31834728,
            31834856-31834922
          Length = 2593

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 133  HAEGVLLAADETDSKSLHFEGGLPVTSLLLSSIIRTYKEQKKPSPF 270
            H++G+LL++ E  +     E  +    + LSS ++++  Q KP PF
Sbjct: 1732 HSDGILLSSPEEQNVVSCLEYAILKNIVELSSEVQSHLNQLKPIPF 1777


>09_04_0244 -
           15984862-15984978,15985054-15985119,15985701-15985793,
           15987284-15987410,15988710-15988840,15989485-15989766,
           15989852-15989985,15990083-15990292,15990456-15990486
          Length = 396

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +1

Query: 31  KNLIQLLKKDDSPVNYGYVFALCEHMGCGTWTVTHAEGVLLAADETDSKSLHFEGGLPVT 210
           K+++ L+   D  V +     + +H+G  TW +T A  V    ++ D+   + EG + + 
Sbjct: 71  KSIVSLISSVDGKVLFTCSGTMVDHVGSATWILTSATLVRKCDNDYDA---YQEGDVKIE 127

Query: 211 SLLLSSII 234
            LL +  I
Sbjct: 128 VLLHNKTI 135


>01_07_0030 +
           40601063-40601182,40601684-40602116,40602217-40602326,
           40602506-40602550
          Length = 235

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 202 PVTSLLLSSIIRTYKEQKKPSPFSADQRYKFA--EYLLSRR 318
           P T++  +S+  TY    +P P+  D RY     E L+SRR
Sbjct: 67  PSTNITDNSLSETYHLVSRPPPYDTDPRYARVQREGLVSRR 107


>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
            22709162-22709206,22709367-22709445,22709522-22709595,
            22709703-22709809,22711116-22711301,22711882-22711920,
            22712020-22712086,22712207-22712281,22713113-22713347,
            22713425-22713755,22714530-22714710,22714810-22714950,
            22715041-22715302,22715503-22715892,22717179-22717735,
            22718421-22718557,22718672-22718853,22718959-22719339,
            22719420-22719545,22719635-22719700,22720056-22721839,
            22721914-22722193,22722386-22722616,22723067-22723588,
            22723683-22723815,22723937-22724193
          Length = 2405

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +1

Query: 34   NLIQLLKKDDSPVNYGYVFALCEHM----GCGTWTVTHAEGVLL--AADETDSKSLHFEG 195
            NL  L+K+  SP  +    +  +H     G   +  T A+   L   +  TD    + +G
Sbjct: 2190 NLHTLVKQTTSPHQFWSSLSSSDHSAFLEGFELFGSTKAKNAFLICTSASTDVNGSNLDG 2249

Query: 196  GLPVTSLLLSSIIR 237
            G  +TSLL+SS+++
Sbjct: 2250 GEELTSLLVSSLLK 2263


>10_08_0735 -
           20200229-20200693,20200813-20201823,20202172-20202272,
           20203424-20203562
          Length = 571

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 182 FISKVACQSLPCYSPRLLEHTKSRRNPRHLVQINDTSSQSTF 307
           F  K+AC  +PC + +LL   + RR     + ++D  + STF
Sbjct: 266 FCHKIACLKIPC-TLQLLNFLRVRRCNMLQIIVSDAPNLSTF 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,493,494
Number of Sequences: 37544
Number of extensions: 269016
Number of successful extensions: 706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)