Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L01
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    31   0.61 
U10401-9|AAA19054.4|  771|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    27   5.7  
AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    27   7.6  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    27   7.6  
AC098856-8|ABO52819.1|  384|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 26/86 (30%), Positives = 41/86 (47%)
 Frame = +1

Query: 7   GFDKEDALKNLIQLLKKDDSPVNYGYVFALCEHMGCGTWTVTHAEGVLLAADETDSKSLH 186
           GFD ++  KN++  + K +S  N G +  +       T T    E VL++     +K+L 
Sbjct: 2   GFDLDEKQKNMMNSMAKYESGDNCGGIITI------ATATNDRIEEVLMSHIIEQNKTLE 55

Query: 187 FEGGLPVTSLLLSSIIRTYKEQKKPS 264
             G  P  +L++ S   T K QK PS
Sbjct: 56  -NGSKPNKTLMVGSPSWTNKLQKLPS 80


>U10401-9|AAA19054.4|  771|Caenorhabditis elegans Hypothetical
           protein T20B12.1 protein.
          Length = 771

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = +1

Query: 232 IRTYKEQKKPSPFSADQRYKFAEYL-LSRRSVNSAKGXXXXXXXXXXXXDDVPTPISIA- 405
           +R Y   KKPS  S++ R +F +Y+ L  +S+ +A G            + V T + +A 
Sbjct: 647 LRVYALLKKPSVLSSETRTEFEKYVRLLEKSLAAANGKLTWPKEEKLALEVVETAVRLAE 706

Query: 406 --IKGKKYVTSESDSVEFS 456
             ++  K++ S++   E S
Sbjct: 707 DRLELAKFIASDTSVKEAS 725


>Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical
           protein C25F9.4 protein.
          Length = 592

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 25/86 (29%), Positives = 41/86 (47%)
 Frame = +1

Query: 7   GFDKEDALKNLIQLLKKDDSPVNYGYVFALCEHMGCGTWTVTHAEGVLLAADETDSKSLH 186
           GF+ ++  KN++  + K +S  N G +  +       T T    E VL++     +K+L 
Sbjct: 2   GFELDEQQKNMMNSMAKYESGDNCGGIITI------ATSTNDRIEEVLISHIFEQNKTLQ 55

Query: 187 FEGGLPVTSLLLSSIIRTYKEQKKPS 264
             G  P  +L++ S   T K QK PS
Sbjct: 56  -NGSKPNKTLMVGSPSWTNKLQKLPS 80


>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
            protein F23B2.12 protein.
          Length = 1080

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 482  TGRPIRSV-IENSTESDSDVTYFLPFIAMLI 393
            T +P+ +  ++ +T+S + VT   PFIAML+
Sbjct: 1046 TSQPVTATTVQATTKSTTSVTVLTPFIAMLV 1076


>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical protein
            F23B2.12 protein.
          Length = 1080

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 482  TGRPIRSV-IENSTESDSDVTYFLPFIAMLI 393
            T +P+ +  ++ +T+S + VT   PFIAML+
Sbjct: 1046 TSQPVTATTVQATTKSTTSVTVLTPFIAMLV 1076


>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -1

Query: 491 ILRTGRPIRSVIEN----STESDSDVTYFLPFIAMLIGVGTSSASVMAASSNRAA 339
           +L    P  +++E     S +SD+D  +   F   L+G GT++A ++A   N A+
Sbjct: 755 LLSVSNPQLNILETLSKFSHDSDADTAHNAIFAMGLVGAGTNNARLVAMLRNLAS 809


>AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.1 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  FDKEDALKNLIQLLKKDDSPVNYGYVFALCE 102
           FDK +A  +L++ L  +D   NY  VF + E
Sbjct: 554 FDKFEAFSSLLEFLHGEDIYFNYNNVFKIIE 584


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
            F29G6.3b protein.
          Length = 1785

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +2

Query: 224  PRLLEHTKSRRNPRHLVQINDTSSQSTFCRVVQ*ILRRGLLYCLKLPSHLLMMCPHR 394
            PR+L HT+    P H +  N      T    +  I R+     + L  H +   PH+
Sbjct: 1604 PRILNHTQHHYTPSHQIVSNTYDDIDTHHGYLPQIPRKETAARVPLGHHFVPQIPHK 1660


>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
           protein C09E7.8b protein.
          Length = 1080

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +1

Query: 382 VPTPISIAIKGKKYVTSES--DSVEFSITDL 468
           VP P+S  +KG+KY+T +   + V+F + D+
Sbjct: 65  VPIPMSPNLKGEKYLTKQDMFEHVQFYLMDV 95


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
           protein C09E7.8a protein.
          Length = 1114

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +1

Query: 382 VPTPISIAIKGKKYVTSES--DSVEFSITDL 468
           VP P+S  +KG+KY+T +   + V+F + D+
Sbjct: 99  VPIPMSPNLKGEKYLTKQDMFEHVQFYLMDV 129


>AC098856-8|ABO52819.1|  384|Caenorhabditis elegans Hypothetical
           protein Y37F4.6 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 456 RELYGVRFRRYVFLAFYRYADRCG 385
           RE +G   R    + FY++A+RCG
Sbjct: 120 RECWGCGIRHVDAVTFYQHAERCG 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,369,620
Number of Sequences: 27780
Number of extensions: 223352
Number of successful extensions: 529
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)