Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K24
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    27   1.4  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   4.3  
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    25   5.7  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   7.5  

>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 388 PPTVPMDNGLPEHHPDVSHENNLMAAEMCENIRYISMKLRARVQALIQ 531
           PPT+     +  +HP+   E N+  A + + +   S+KLR+ ++ ++Q
Sbjct: 70  PPTIEFTTRI--YHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQ 115


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 343 FDWFTRLLTPQNHLIPPTVPMDNGLPEHHPDVSH 444
           + W T   T  +HL  P+ P    +P HHP   H
Sbjct: 63  YTWSTSPDTDSSHL--PSTPPTVDIPFHHPHTIH 94


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 480 YPIYLDET*GQSASLDSMKLQSTWG 554
           YPI++ E      ++DSM  Q  WG
Sbjct: 34  YPIFISEIDDAKEAIDSMPNQFRWG 58


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 190 YTGYYTRATEGEAGHRPYSRGKCRSIRHYFGLLRIA 83
           YTG YTR  E    H+   R + + I+  F  L+ A
Sbjct: 325 YTGPYTRNPELRTSHKLAERKRRKEIKELFDDLKDA 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,790
Number of Sequences: 5004
Number of extensions: 47447
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)