Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K24
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    37   0.009
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    36   0.015
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr...    32   0.24 

>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
            protein R52.2 protein.
          Length = 1019

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -2

Query: 549  TSTGVSLNQGLHSGPKFHRDISDILTHFRRHQIVFVADIRMMFRQTIVHRDGRRYQMILW 370
            T T  SLN  LH+G     +++ +L   R+  I+  +D+   F Q  +H +   +   LW
Sbjct: 882  TKTSKSLNAILHTGESLLPNLTGVLLRIRQPSILVSSDLEKAFLQLGLHHEDHDFCRFLW 941

Query: 369  REQPCEP 349
              QP  P
Sbjct: 942  --QPWNP 946


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
           protein ZC132.5 protein.
          Length = 1277

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -2

Query: 534 SLNQGLHSGPKFHRDISDILTHFRRHQIVFVADIRMMFRQTIVHRDGRRYQMILWREQPC 355
           SLN  ++ GP    D  D  T FR  + V +AD+   F Q  ++   R    +LW + P 
Sbjct: 238 SLNDAIYQGPTILPDSVD--TRFRSGKTVLLADVEKAFLQVHLNESDRDVTRVLWVKNPD 295

Query: 354 EP 349
            P
Sbjct: 296 LP 297


>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
           protein R04A9.2 protein.
          Length = 1057

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -2

Query: 432 RMMFRQTIVHRDGRRYQMIL 373
           R+MFR T+VH DGRR+++ L
Sbjct: 119 RIMFRATLVHTDGRRFELSL 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,302,943
Number of Sequences: 27780
Number of extensions: 273839
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)