Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K22
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0217 - 12769956-12770252,12770340-12770490,12770572-127708...    28   4.7  
01_01_0964 + 7587369-7587529,7587857-7588184                           27   8.2  

>04_03_0217 -
           12769956-12770252,12770340-12770490,12770572-12770803,
           12770979-12771040,12771189-12771235,12771313-12771431,
           12771513-12771671,12771745-12771925,12772010-12772361,
           12772673-12772717,12772789-12772854,12772951-12773016,
           12773107-12773178,12773283-12773357,12773437-12773508,
           12774169-12774240,12774499-12774570,12776252-12776323,
           12776400-12776471,12776811-12776997,12778343-12778457
          Length = 861

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 377 THNTLYTLSRINFIYNLLHPHVP-FVITFTLLKYL 276
           ++NTL  +++++  YN L   +P F+  FT +KYL
Sbjct: 91  SNNTLCRITKLDLNYNYLTGFIPSFIGKFTSMKYL 125


>01_01_0964 + 7587369-7587529,7587857-7588184
          Length = 162

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 497 VVRNAPVVACTVKVLLVPNSARGFHTPLLI 408
           V  NA V AC++ VLLVP+S       LL+
Sbjct: 57  VAANAAVSACSLVVLLVPSSTSKLAARLLL 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,111,150
Number of Sequences: 37544
Number of extensions: 208051
Number of successful extensions: 455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)