Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K22
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical pr...    31   0.59 
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    29   3.2  
Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U23523-4|AAC46557.1|   83|Caenorhabditis elegans Hypothetical pr...    27   9.6  
L16685-8|AAO12393.1|  285|Caenorhabditis elegans Hypothetical pr...    27   9.6  
L16685-7|AAO12394.1|  306|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical
           protein C18H2.4 protein.
          Length = 934

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 76  LDSNYHPYYHSNLGCFHLHHHDSP 5
           L+   HPY HSNLG F + H   P
Sbjct: 864 LNQGSHPYLHSNLGSFFIIHDGRP 887


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 347 INFIYNLLHPHVPF---VITFTLLKYLYIQIKVTKCIL*NLIILSYIPDTSD 201
           I  ++   +  +PF    I+  LLK++Y  ++V  C+  + I+  Y+P+  +
Sbjct: 125 ITILFENRYNSIPFNKHKISGKLLKFVYYTVRVIICVFFSSILFLYLPENQE 176


>Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.14 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = -3

Query: 476 VACTVKVLLVPNSARGFHTPLLIK*PCHTTSQVTHNTLYTLSRINFIYNLLHPHVPFVIT 297
           ++ T+ ++ VP++ +      L   PC T           +S  N ++ +++ ++PF   
Sbjct: 163 ISLTLFLINVPSNQKTAKREALTMYPCPTEEFFIFPIYILISNTNNLHLVIYVYIPFFAL 222

Query: 296 FTLLKYLY 273
            TL  +L+
Sbjct: 223 NTLAHFLF 230


>U23523-4|AAC46557.1|   83|Caenorhabditis elegans Hypothetical
           protein F53A9.2 protein.
          Length = 83

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 85  GHFLDSNYHPYYHSNLGCFHLHHH 14
           GH L  ++H ++  + G  H HHH
Sbjct: 57  GHALTGHHHHHHGHHFGHHHHHHH 80


>L16685-8|AAO12393.1|  285|Caenorhabditis elegans Hypothetical
           protein ZC21.6a protein.
          Length = 285

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 429 VSYSFINQITLSHH-ITSYTQYSIHIV*NKFHL*LIASTCAFCNNLYFVKISL 274
           VSY FI  +  S   ++SY ++   ++    HL L A TCA     Y    S+
Sbjct: 146 VSYVFIIHLLFSRRKVSSYHRHWGSMLRLGIHLILFAGTCALTGTAYLGSFSI 198


>L16685-7|AAO12394.1|  306|Caenorhabditis elegans Hypothetical
           protein ZC21.6b protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 429 VSYSFINQITLSHH-ITSYTQYSIHIV*NKFHL*LIASTCAFCNNLYFVKISL 274
           VSY FI  +  S   ++SY ++   ++    HL L A TCA     Y    S+
Sbjct: 212 VSYVFIIHLLFSRRKVSSYHRHWGSMLRLGIHLILFAGTCALTGTAYLGSFSI 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,735,463
Number of Sequences: 27780
Number of extensions: 199919
Number of successful extensions: 445
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)