Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K22
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   2.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   3.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.8  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 461 LRCTLRRAHCELLG 502
           L C L R HC+++G
Sbjct: 37  LHCILDRGHCDVIG 50


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 315 CAFCNNLYFVKISLHTN 265
           C FCN  Y  K SL T+
Sbjct: 38  CEFCNRRYRTKNSLTTH 54


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 453 PRAEFGTRVSYSFINQITLSHH 388
           PR  +  R  Y F+N I   HH
Sbjct: 120 PRLRYSNRSQYEFLNAI---HH 138


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 453 PRAEFGTRVSYSFINQITLSHH 388
           PR  +  R  Y F+N I   HH
Sbjct: 120 PRLRYSNRSQYEFLNAI---HH 138


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 453 PRAEFGTRVSYSFINQITLSHH 388
           PR  +  R  Y F+N I   HH
Sbjct: 171 PRLRYSNRSQYEFLNAI---HH 189


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 453 PRAEFGTRVSYSFINQITLSHH 388
           PR  +  R  Y F+N I   HH
Sbjct: 120 PRLRYSNRSQYEFLNAI---HH 138


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = -1

Query: 64  YHPYYHSNLGCFHLHHHDSP 5
           +H ++H      HLH+   P
Sbjct: 351 HHHHHHQTQSLQHLHYRQPP 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,715
Number of Sequences: 438
Number of extensions: 2717
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)