Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K21
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797 31 0.40
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 31 0.53
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 30 0.71
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 0.71
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 30 0.93
01_06_1667 + 38994627-38995718 28 2.9
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686... 28 3.8
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 27 5.0
06_03_0355 + 19822110-19824491 27 5.0
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 27 5.0
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 27 6.6
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 27 6.6
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116... 27 8.7
>12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797
Length = 341
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 202 ETTPIVYEKH-EINENKHDWFDVTEDGAACVEIIQDKIEELSIV 330
ETT +V+E E + DW +TE G VE+IQ E+ ++
Sbjct: 115 ETTAVVHESAGEASTTSFDWSKLTEMGYRAVEVIQTWSSEVKLL 158
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 30.7 bits (66), Expect = 0.53
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 139 LKEDHINIQFDETNKIIEDIKETTPIVYEKHEINENKHDWFDVTED 276
+KE I+F+ET +I++ ++E T V EK + E F+ D
Sbjct: 4501 VKEGGNKIEFEETIQIVQHVEEKTNFVPEKSSVPEKVFTEFEKLND 4546
Score = 30.3 bits (65), Expect = 0.71
Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +1
Query: 37 DILKRERKEIETQILAEIDTTEI-VFLEQALEMLKLKEDHINIQFDETNKIIEDIKETTP 213
DIL + KE+E + E E+ + +++ + ++L+E + + K I+ I +
Sbjct: 715 DILSEDEKEMEVGHVNECSEIEVGLMVKEVVNKIELEEADSETKSNVDKKPIQ-ILQFEH 773
Query: 214 IVYEKHEINENKHDWFDVTEDGAACVEIIQDKIEELSIVDSGLNPEAAEFSLCG 375
+ + +++K ++ V D ++ IEE S G + E + + CG
Sbjct: 774 MDEAEFGADDSKSNYLAVNADNVQRDASLRKNIEESSASLDGADDEKNDMAYCG 827
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 30.3 bits (65), Expect = 0.71
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = +1
Query: 1 ARGFEANKQQVHDILKRERKEIETQILAEIDTT--EIVFLEQALEMLKLKEDHINIQFDE 174
ARG A ++ + + + KE++ QI E + T +++ L+ + LK KE+ I+ E
Sbjct: 175 ARGTGAKREL--EAARNKIKELQRQIQMEANQTKGQLLLLKNQVIALKSKEEEAAIKDAE 232
Query: 175 TNKIIEDIKETTPIVYEKHEINENKHDWFDVTEDGAACVEIIQDKIEELSIV 330
+ ++ +KE V E +NK ++ D ++ Q KI E +V
Sbjct: 233 VQRKLKKLKELEVEVVELR--RKNKELLYE-KRDLIVKLDAAQGKITESDVV 281
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 30.3 bits (65), Expect = 0.71
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = +1
Query: 1 ARGFEANKQQVHDILKRERKEIETQILAEIDTT--EIVFLEQALEMLKLKEDHINIQFDE 174
ARG A ++ + + + KE++ QI E + T +++ L+ + LK KE+ I+ E
Sbjct: 480 ARGTGAKREL--EAARNKIKELQRQIQMEANQTKGQLMLLKNQVIALKSKEEEAAIKDAE 537
Query: 175 TNKIIEDIKETTPIVYEKHEINENKHDWFDVTEDGAACVEIIQDKIEELSIV 330
+ ++ +KE V E +NK ++ D ++ Q KI E +V
Sbjct: 538 VQRKLKKLKELEVEVVELR--RKNKELLYE-KRDLIVKLDAAQGKITESDVV 586
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 29.9 bits (64), Expect = 0.93
Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Frame = +1
Query: 19 NKQQVHDILKRERKEIETQILAEIDTTEIVFLEQALEMLKLKEDHINIQFDETNKIIEDI 198
+++ +H+ L++ER+EI+ +I ++++ + F E+ E ++ ++D Q D + +
Sbjct: 430 HREAIHNELQKEREEIQ-RIKSDLEKEKAFFEEEKREAIQAQQDLAITQADRDELLTLQM 488
Query: 199 K---ETTPIVYEKHEINENKHDWFDVTEDGAACVEIIQDKIEEL 321
K E + +K E+ + E E+I +K EEL
Sbjct: 489 KLKEEIDSLRAQKRELMADADRLQAEKERFEIEWELIDEKKEEL 532
>01_06_1667 + 38994627-38995718
Length = 363
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 115 EQALEMLK-LKEDHINIQFDETNKIIEDI 198
E+ALE LK +KED + DE NK+I+ +
Sbjct: 285 EKALECLKEMKEDGMEPNMDEYNKLIQSL 313
>04_03_0461 -
16165126-16165419,16165947-16166195,16168510-16168645,
16171251-16171469,16172738-16173116,16173660-16173918,
16176052-16176315
Length = 599
Score = 27.9 bits (59), Expect = 3.8
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 46 KRERKEIETQILAEI--DTTEIVFLEQALEMLKLKEDHINIQFDETNKIIEDIKETTPIV 219
K ++ + + +IL E DT + + L A++ L + DH+ Q DE N +I DIKE+
Sbjct: 97 KADKLKQDVRILFETHNDTAKKMHLVDAVQRLGI--DHL-FQ-DEINNVISDIKESEFTS 152
Query: 220 YEKHEI 237
HE+
Sbjct: 153 SSLHEV 158
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +1
Query: 175 TNKIIEDIKETTPIVYEKHEINENKHDWFDVTEDGAACVEIIQDKIEELSIVDSGLN-PE 351
T K +D + VYE ++ HD +T AC E + + V++ N P+
Sbjct: 530 TVKTCQDCSDANSPVYETAGLSSEMHDISSITSAQDACQEKVV-IVSSYETVETSYNVPD 588
Query: 352 AAEFSLCGDVDNQSGEVYVPEPITSVDSE 438
+C V N + P+ + V E
Sbjct: 589 ILVDKVCHAVGNPLDDSLQPKEQSGVSIE 617
>06_03_0355 + 19822110-19824491
Length = 793
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 181 KIIEDIKETTPIVYEKHEINENKHDWFDVTEDGAACVEIIQDKIEEL 321
K +E++++ I E I +H+WF +D A + I + EEL
Sbjct: 598 KRLEEVQQKLAIANEM--IENFQHEWFSKLDDWARSIHFIWCRTEEL 642
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/68 (23%), Positives = 37/68 (54%)
Frame = +1
Query: 1 ARGFEANKQQVHDILKRERKEIETQILAEIDTTEIVFLEQALEMLKLKEDHINIQFDETN 180
ARG + K ++D K KEI+ + L E+D E+ ++ +E+++ ++ +E
Sbjct: 256 ARGIQPPKIDINDAYKEFEKEIQ-EDLQEVDDR---LEEEEIDAAAEREEYLTLEQEEYR 311
Query: 181 KIIEDIKE 204
+ ++ +K+
Sbjct: 312 QRVDMLKK 319
>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = +1
Query: 13 EANKQQVHDILKRERKEI----ETQILA---EIDTTEIVFLEQALEMLKLKEDHINIQFD 171
E + D+LKRE++ E L ++DTT + L E LK + + D
Sbjct: 946 ELQSNETKDLLKREQETAKAAWEKAALVPEVQVDTTLVNELTAENEKLKTLVASLETKID 1005
Query: 172 ETNKIIEDIKETTPIVYEKHEINENK 249
ET + +++K+ + +K E+K
Sbjct: 1006 ETEQRFDEVKKAREELLKKATDAESK 1031
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/65 (23%), Positives = 34/65 (52%)
Frame = +1
Query: 85 EIDTTEIVFLEQALEMLKLKEDHINIQFDETNKIIEDIKETTPIVYEKHEINENKHDWFD 264
E++ TE +E A K KE+H++ + +E + E++ + + E+ + + D +
Sbjct: 229 EVEMTEAPLVENATATEK-KEEHVDEEEEEEEEDPEEMVPASEEEADAEEVEKEEEDPEE 287
Query: 265 VTEDG 279
V ++G
Sbjct: 288 VEKEG 292
>09_01_0079 -
1159963-1160211,1160303-1160509,1160631-1160801,
1161732-1161869,1162184-1162273,1162354-1162431,
1162510-1163166,1163245-1163363,1164305-1164584
Length = 662
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 37 DILKRERKEIETQILAEIDTTEIVFLEQALEMLKLK 144
D L+ E+ T +L E+D TE++ L ++ E LK K
Sbjct: 591 DQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAK 626
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.133 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,297,489
Number of Sequences: 37544
Number of extensions: 185474
Number of successful extensions: 444
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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