Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K21
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              25   0.48 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.1  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              23   1.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   3.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.9  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 259 FDVTEDGAACVEIIQDKIEELSIVDSGLNPEAAEFSLCGDVD 384
           F+  +DG    E++  +I E+ + ++G+N    E S   D D
Sbjct: 70  FNGYDDGGNFNEVVIREIAEIFLDENGVNKLITECSAISDAD 111


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 145 EDHINIQFDETNKIIEDIKETTPIVYEKHEINENKHDWFDVTEDGAACVEIIQDKIEE 318
           E+  +   D  +K++  IK      YE H+I++ K      T  G+ C  I   +I++
Sbjct: 239 ENRHSSTLDIDHKMLTPIKSEPIDAYEMHQISKKKLS--PATPKGSKCSMITTPEIKK 294


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 259 FDVTEDGAACVEIIQDKIEELSIVDSGLNPEAAEFSLCGDVD 384
           F+  +DG    E++  +I E+ + ++ +N    E S   D D
Sbjct: 70  FNAYDDGGNFNEVVVREIAEIYLDENEVNKLITECSAISDAD 111


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 154 INIQFDETNKIIEDIKETTPIVYE 225
           IN Q DE N  I+D++     +YE
Sbjct: 296 INRQVDELNFDIQDLERWRDRIYE 319


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 241 ENKHDWFDVTEDGAACVEIIQDKIEELSIVD 333
           +NK         GA+ + +   KI++++I+D
Sbjct: 435 QNKPKVLHAIRRGASILRVSMPKIKDVNIID 465


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 50  GREKKSKPKYWRK 88
           G+E K+K   WRK
Sbjct: 222 GKESKTKLSQWRK 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.133    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,010
Number of Sequences: 438
Number of extensions: 2226
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)