Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K19
         (209 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0067 - 20460206-20460703,20461255-20461530                       27   2.1  
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347...    27   2.7  
05_06_0279 + 26896997-26897457,26898100-26898220,26898310-268985...    25   6.3  
05_04_0005 + 17063717-17063866,17065737-17065855,17066903-170672...    25   6.3  
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526...    25   8.4  
01_01_1217 + 9830435-9830770                                           25   8.4  

>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 8   DYLLMRGELISDVSDLITVKNFEPVY 85
           DY +  G+L SDV+DLI    F+  Y
Sbjct: 159 DYTIFVGDLASDVTDLILQDTFKAHY 184


>05_06_0286 +
           26932395-26933155,26934287-26934407,26934496-26934772,
           26934934-26935094
          Length = 439

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 6/29 (20%)
 Frame = +1

Query: 94  RGRCFGGCSE------HGIVRNKEHQRRH 162
           +G CFGGC E      + ++RN++++R H
Sbjct: 382 QGSCFGGCHEINRRIDYVMIRNQDYERCH 410


>05_06_0279 +
           26896997-26897457,26898100-26898220,26898310-26898586,
           26898735-26898895
          Length = 339

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
 Frame = +1

Query: 94  RGRCFGGCSE------HGIVRNKEHQRRH 162
           +G CFGGC E      + + RN++++R H
Sbjct: 282 QGSCFGGCHEINRRIDYVMTRNQDYERCH 310


>05_04_0005 +
           17063717-17063866,17065737-17065855,17066903-17067218,
           17067579-17067722,17067909-17067926,17068853-17068954,
           17069358-17069461,17069543-17069669,17069809-17069961,
           17070261-17070361,17070538-17070739,17071245-17071469
          Length = 586

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 205 VVVFLGFGIPLAYVNDASD 149
           ++ F   G+PLAYV +A D
Sbjct: 362 MIFFSAHGVPLAYVEEAGD 380


>08_01_0600 -
           5262573-5262773,5262850-5262952,5263050-5263180,
           5263263-5263312,5265266-5265725,5266349-5266708
          Length = 434

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 8   DYLLMRGELISDVSDLITVKNFEPVYFN-SGADALEAALNMES 133
           DY +  G+L +DV+D I  + F   Y +  GA  +   + M S
Sbjct: 184 DYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMRS 226


>01_01_1217 + 9830435-9830770
          Length = 111

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 94  RGRCFGGCSEHGIVRNKEHQRR--H*RMREG 180
           RGRC    +EHG+  N E  +   H R++ G
Sbjct: 70  RGRCGAVKNEHGLANNSEKSQNGFHRRLQVG 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,686,834
Number of Sequences: 37544
Number of extensions: 94546
Number of successful extensions: 243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)