Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K15
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   117   1e-27
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   2.6  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.5  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  117 bits (282), Expect = 1e-27
 Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
 Frame = +1

Query: 193 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 372
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 373 PXKGLFKILEKYRPETXX-XXXXXXXXXXXXXXXXXXXXXXXRPNTLRAGTNTVTKLVEK 549
               +FK+L KYRPET                          +P  ++ G N V  L+E 
Sbjct: 86  TATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEA 145

Query: 550 KNAQLVV 570
           K A+LV+
Sbjct: 146 KKAKLVL 152


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 314 SVVSKCRRQSTSSPRH*IKPQXKVCSRSWRNTG 412
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 301 KAVLQRRLKVPPPINQFTQTLDKTPXKGLFKILE 402
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 344 TSSPRH*IKPQXKVCSRSWRNTGQKLRQSGKSV 442
           + + RH + P+ ++C  S RN G    +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,432
Number of Sequences: 5004
Number of extensions: 35808
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)