Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K13
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   2.6  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    25   6.0  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 433 YQNIFEKKNFRVIINYRKQKYLNSLKKS 350
           Y NIF K +F  I ++ K  Y N LK+S
Sbjct: 176 YANIFSKLSFSWISSFIKFGYTNYLKES 203


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 152 VYLSCRSIYVFK*SNECVENYVFVVE*TFFYRESWS*KKITNTLDISSS 298
           +YL+ + I +   SNE  E +V V+  T  YR  +S   I+  L  SSS
Sbjct: 79  LYLNEKIIRLIATSNEDAEEWVHVLRSTTGYRAPFSRHPISYILANSSS 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,906
Number of Sequences: 5004
Number of extensions: 42210
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)