Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K13
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0198 - 11527711-11528163 30 0.85
05_03_0045 + 7752571-7752599,7754013-7754078,7754228-7754228,775... 29 1.5
07_03_0166 + 14637891-14638469 29 2.0
05_05_0169 - 22893405-22893575,22893649-22893927 29 2.0
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 29 2.0
05_03_0167 - 9111581-9111694,9111864-9112358 28 3.4
01_06_0239 - 27791301-27791717,27793526-27793585,27793774-27793959 28 3.4
09_02_0076 - 3959572-3960279 28 4.5
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 28 4.5
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838... 28 4.5
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799... 28 4.5
11_04_0055 + 12935763-12936287 27 6.0
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 27 6.0
06_01_1067 - 8700185-8700862 27 6.0
04_01_0127 + 1368763-1369276,1385539-1385742,1386221-1386444,138... 27 6.0
02_03_0326 + 17751485-17751955 27 6.0
09_01_0110 - 1714783-1714803,1718645-1719370 27 7.9
04_04_1689 + 35379627-35379746,35379823-35380344,35380428-353805... 27 7.9
>11_03_0198 - 11527711-11528163
Length = 150
Score = 30.3 bits (65), Expect = 0.85
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLV 308
+KK+F ++ + ++LNS ++++ F K KIK+V
Sbjct: 46 QKKDFEAMMQQARDQFLNSFMQTRKGTFVQKYKIKVV 82
>05_03_0045 +
7752571-7752599,7754013-7754078,7754228-7754228,
7757535-7758380
Length = 313
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -1
Query: 469 ELICEN*VKFYIYQNIFEKK-NFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLV 308
E+ +N V IY+ E K I+N ++K++NS K+++Q K K+K+V
Sbjct: 64 EVGAKNIVPVTIYKLSPEHKLELEQIVNSAQEKFMNSFKETRQGTVIQKYKLKVV 118
>07_03_0166 + 14637891-14638469
Length = 192
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLVNIQGGT 290
+KK+F ++ + ++LNS ++++ K K+K+V GT
Sbjct: 46 QKKDFEAMLQQAQDQFLNSFMQTRKGTLVQKYKVKVVADDPGT 88
>05_05_0169 - 22893405-22893575,22893649-22893927
Length = 149
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLVNIQGGT 290
+K+ F + + ++LNS ++++ F K KIK+V GT
Sbjct: 44 QKQEFEATMQQARDQFLNSFMQTRKGTFVQKYKIKVVADSPGT 86
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLVNIQGGT 290
+KK F ++ + ++LNS ++++ K KIK+V GT
Sbjct: 44 QKKEFEAMLQQAQDQFLNSFMQTRKGTLVQKYKIKVVADDPGT 86
>05_03_0167 - 9111581-9111694,9111864-9112358
Length = 202
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLVNIQGGT 290
+KK F I+ + ++L S ++++ K KIK+V GT
Sbjct: 44 QKKEFEAILQQARDQFLKSFMQTRKGTLVQKYKIKVVADDPGT 86
>01_06_0239 - 27791301-27791717,27793526-27793585,27793774-27793959
Length = 220
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLVNIQGGT 290
+KK+F ++ + ++LNS ++++ K K+K+V GT
Sbjct: 117 QKKDFDAMMQQARDQFLNSFMQTRKGTLVQKYKVKVVADDPGT 159
>09_02_0076 - 3959572-3960279
Length = 235
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLV 308
+KK F ++ + ++LNS ++++ K KIK+V
Sbjct: 44 QKKEFEAMLQQARDQFLNSFMQTRKGTLVQKYKIKVV 80
>03_02_0067 +
5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 116 SFLFVVEFYFMRVYLSCRSIYV 181
S+L+V +F R+Y+SCRS+Y+
Sbjct: 771 SWLYV---FFFRIYMSCRSLYL 789
>02_05_1304 +
35581172-35581345,35582504-35582748,35583148-35583829,
35583908-35584262,35584558-35584649,35584889-35585083,
35585167-35585840,35586134-35586224
Length = 835
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 48 ENNWHLISLKKFNNLCEMLNSIHPFYL 128
+ NWH ++FNN LNS +P +L
Sbjct: 189 KKNWHAKLSEEFNNYISSLNSEYPGFL 215
>01_01_1009 +
7992040-7992287,7992747-7993144,7993301-7993441,
7993517-7993773,7993868-7994169,7994342-7994580,
7994654-7994857,7994946-7995680,7995764-7996155
Length = 971
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 57 WHLISLKKFNNLCEMLNSIHPFYLWLNF 140
W+ SL + NL ++NS+ P Y +L F
Sbjct: 445 WNATSLSWWENLEAVVNSVQPMYSFLRF 472
>11_04_0055 + 12935763-12936287
Length = 174
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLVNIQGGT 290
+KK+F ++ + ++LNS ++++ K K+K+V GT
Sbjct: 46 QKKDFDAMMQQARDQFLNSFMQTRKGTLVQKYKVKVVADNLGT 88
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLVNIQGGT 290
+KK F ++ ++LNS ++++ K KIK+V GT
Sbjct: 46 QKKEFEAMLQQAWDQFLNSFMQTRKGTLVQKYKIKVVADDPGT 88
>06_01_1067 - 8700185-8700862
Length = 225
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLVNIQGGT 290
+KK+F ++ ++LNS ++++ K K+K+V GT
Sbjct: 46 QKKDFEAMLQQAWDQFLNSFMQTRKGTLVQKYKVKVVADDPGT 88
>04_01_0127 +
1368763-1369276,1385539-1385742,1386221-1386444,
1386520-1386707,1394955-1394970
Length = 381
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLV 308
+KK F ++ + ++LNS ++++ K KIK+V
Sbjct: 46 QKKEFEAMMQQARDQFLNSFMQTRKGTLVQKYKIKVV 82
>02_03_0326 + 17751485-17751955
Length = 156
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLVNIQGGT 290
+KK F ++ + + LNS ++++ K KIK+V GT
Sbjct: 44 QKKEFEAMLQQARDQCLNSFMQTRKGTLVQKYKIKVVADDPGT 86
>09_01_0110 - 1714783-1714803,1718645-1719370
Length = 248
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 418 EKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLV 308
+K F I+ ++K++NS K+++Q K K+K+V
Sbjct: 59 QKLEFVQIMKSAQEKFMNSFKETRQGTVIQKYKLKVV 95
>04_04_1689 +
35379627-35379746,35379823-35380344,35380428-35380526,
35380608-35380979
Length = 370
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -1
Query: 448 VKFYIYQNIFEKKNFRVIINYRKQKYLNSLKKSKQIAFTIKLKIKLVNIQGGTYIQCIC 272
+KF N ++ FR I+N+R ++ N ++ + + L I + GG + IC
Sbjct: 32 MKFIERGNRIDENVFREIVNHRSLRHPNIIRFKEVVVTGRHLAIVMEYAAGGELFERIC 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,659,898
Number of Sequences: 37544
Number of extensions: 187035
Number of successful extensions: 315
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -